Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--1000
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   142   3e-35
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    26   3.6  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  142 bits (345), Expect = 3e-35
 Identities = 63/88 (71%), Positives = 79/88 (89%), Gaps = 1/88 (1%)
 Frame = +2

Query: 2   EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAI 181
           +I+D+FL P LNDEV+K++PVQKQTRAGQRTR KAFV IGD++GH+GLG+KC+KEVATAI
Sbjct: 66  QIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAI 124

Query: 182 RGAIILAKLSVLPVRRGYWGNKIGS-HT 262
           RGAII+ KLS++P+RRGYWG  +G  HT
Sbjct: 125 RGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score =  103 bits (246), Expect = 3e-23
 Identities = 43/60 (71%), Positives = 52/60 (86%)
 Frame = +1

Query: 256 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLGKF 435
           PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST  LG F
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 3   RSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 107
           R+ I S+     +++L S   R KH+P+   ++RH
Sbjct: 350 RASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,014
Number of Sequences: 5004
Number of extensions: 53237
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)