Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--1000
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 146 9e-36
07_01_0756 + 5819367-5820038,5820847-5821005 142 2e-34
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 79 2e-15
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 44 9e-05
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031 29 2.1
05_03_0348 - 12792940-12793335 29 3.7
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 146 bits (355), Expect = 9e-36
Identities = 89/168 (52%), Positives = 98/168 (58%), Gaps = 7/168 (4%)
Frame = +2
Query: 20 LGPSLNDEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 199
L P L DEV+KI PVQKQTRAGQRTR KAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Query: 200 AKLSVLPVRRGYWGNKIGS-HT-PSLARSPAS-----VVP*QSG*FXXXXXXXXXXRQFL 358
AKLSV+PVRRGYWGNKIG HT P +VP G QF
Sbjct: 141 AKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFA 200
Query: 359 RSFFRWLVYRIATRQLVVQLXTLGNFXXXXXXXXXXXXXXLTPDLWRD 502
+ R +T+ TLGNF LTPD WRD
Sbjct: 201 GIEDVFTSSRGSTK-------TLGNFVKATFDCLMKTYGFLTPDFWRD 241
Score = 106 bits (255), Expect = 1e-23
Identities = 50/94 (53%), Positives = 64/94 (68%)
Frame = +1
Query: 253 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLGK 432
+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST LG
Sbjct: 159 QPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGN 218
Query: 433 FC*SHIRCHCQDICLPHS*LVEGYPVTKSPYSEF 534
F + C + KSP+ E+
Sbjct: 219 FVKATFDCLMKTYGFLTPDFWRDTKFVKSPFQEY 252
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 142 bits (343), Expect = 2e-34
Identities = 67/82 (81%), Positives = 73/82 (89%), Gaps = 1/82 (1%)
Frame = +2
Query: 20 LGPSLNDEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 199
L P L DEV+KI PVQKQTRAGQRTR KAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Query: 200 AKLSVLPVRRGYWGNKIGS-HT 262
AKLSV+PVRRGYWGNKIG HT
Sbjct: 144 AKLSVVPVRRGYWGNKIGKPHT 165
Score = 107 bits (258), Expect = 5e-24
Identities = 47/68 (69%), Positives = 57/68 (83%)
Frame = +1
Query: 253 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLGK 432
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST LG
Sbjct: 162 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGN 221
Query: 433 FC*SHIRC 456
F + C
Sbjct: 222 FVKATFDC 229
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/62 (56%), Positives = 46/62 (74%)
Frame = +1
Query: 250 RKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLG 429
RKPHTV CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST L
Sbjct: 46 RKPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLS 105
Query: 430 KF 435
F
Sbjct: 106 NF 107
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 107 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 202
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/63 (31%), Positives = 38/63 (60%)
Frame = +2
Query: 35 NDEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 214
++ V+++ V K + G++ +A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 215 LPV 223
+ V
Sbjct: 231 VTV 233
>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
Length = 538
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 384 YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLA 271
Y ++++L+++W H+ R + PD G + DLA
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA 447
>05_03_0348 - 12792940-12793335
Length = 131
Score = 28.7 bits (61), Expect = 3.7
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = +1
Query: 118 WRQQRSYWFGCEVQQGS--RHCHSRRYYPC*AVSSTSPKRLLG*QDRKPHTVPCKVTGKC 291
WR++R W G ++ S R C + AV+ P G ++R P P + T +
Sbjct: 7 WRKRRRCWRGGGKKEASPSRRCRIQEKGKGVAVA---PAWRPGWEERVP---PSRATVRV 60
Query: 292 GSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLGK 432
+ + AP G G +AP KK A D RG+ G+
Sbjct: 61 RELGIEASTAPVGKGGGAAPFEKKPSLAASAVDGSARGRGAAPPPGE 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,716,230
Number of Sequences: 37544
Number of extensions: 407167
Number of successful extensions: 1000
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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