Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--1000
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              164   4e-41
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.30 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     32   0.30 
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 29   2.8  
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)             29   2.8  
SB_11456| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 29   3.8  
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  28   5.0  
SB_57700| Best HMM Match : Parecho_VpG (HMM E-Value=7.7)               27   8.7  
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)               27   8.7  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  164 bits (399), Expect = 4e-41
 Identities = 79/88 (89%), Positives = 83/88 (94%), Gaps = 1/88 (1%)
 Frame = +2

Query: 2   EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAI 181
           EIIDFFLG +L DEVLKIMPVQKQTRAGQRTR KAFVAIGD+NGH+GLGVKCSKEVATAI
Sbjct: 40  EIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHVGLGVKCSKEVATAI 99

Query: 182 RGAIILAKLSVLPVRRGYWGNKIGS-HT 262
           RGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 100 RGAIILAKLSVIPVRRGYWGNKIGKPHT 127



 Score =  121 bits (291), Expect = 5e-28
 Identities = 58/94 (61%), Positives = 65/94 (69%)
 Frame = +1

Query: 253 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLGK 432
           KPHTVPCKVTGKCGS  VRLIPAPRGTGIVSAPVPKKLLQMAG++DCYTS RG T  LG 
Sbjct: 124 KPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGN 183

Query: 433 FC*SHIRCHCQDICLPHS*LVEGYPVTKSPYSEF 534
           F  +      +        + +    TK+PY EF
Sbjct: 184 FAKATFAAISETYAYLTPDMWKETVFTKTPYQEF 217


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -1

Query: 208 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLXTCALSGTCLFLYRHDLKNLIIQG 29
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292

Query: 28  RAEEEI 11
           R ++E+
Sbjct: 293 RNQDEL 298


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -1

Query: 208 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLXTCALSGTCLFLYRHDLKNLIIQG 29
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576

Query: 28  RAEEEI 11
           R ++E+
Sbjct: 577 RNQDEL 582


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 83  GQRTRXKAFVAIGDNNGHIGLGVKCSKEVA 172
           G++ + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
          Length = 394

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 411 TTS*RVAIL-YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLPILL 241
           T S +++IL YT +  +  RN++ +NT  T  R Q +   TT+   L  D   L ILL
Sbjct: 183 TDSEKLSILVYTRNSTQTARNYQYYNTRKTL-RRQRETINTTIHAKLYTDSEKLSILL 239



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 390 ILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLPILL 241
           +LYT +  +  RN++ +NT  T    Q +   TT+   L  D   L ILL
Sbjct: 238 LLYTRNSTRTARNYQYYNTRETL-HGQRETINTTIHAKLYTDSEKLSILL 286



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 390 ILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLPILL 241
           +LYT +  +  RN++ +NT  T  R Q +   TT+   L  D   L IL+
Sbjct: 36  LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 84



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 390 ILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLPILL 241
           +LYT +  +  RN++ +NT  T  R Q +   TT+   L  D   L IL+
Sbjct: 285 LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 333



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 411 TTS*RVAIL-YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLPIL 244
           T S +++IL YT +  +  RN++ +NT  T  R Q +   TT+   L  D   L IL
Sbjct: 324 TDSEKLSILVYTRNSTQTARNYQYYNTRKTL-RRQRETINTTIHAKLYTDSEKLSIL 379


>SB_11456| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 391

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 356 GTGADTIPVPRG-AGISRTVTEPHLPVTLQGTVCGFLSCY 240
           GT   T+P   G A ++  + E  +  TL  TV GF++C+
Sbjct: 228 GTSGSTLPSNEGRANLTVNIEEVKVTKTLFATVVGFVTCW 267


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = -1

Query: 181 NGSGDFLAALHTQTNMTVVVANGNKCLXTCALSGTCLFLYRHDL 50
           N  G  LA  +   N+  +V NG K    C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147


>SB_57700| Best HMM Match : Parecho_VpG (HMM E-Value=7.7)
          Length = 214

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 387 GLLHVSSWFNXXPWEILLKPH 449
           G  HV  WF+   W  L KPH
Sbjct: 56  GARHVGDWFHGDTWNPLDKPH 76


>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
          Length = 963

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 210 DSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALXRVRCPA 79
           D+L+  IAP    A SLL      + P+++P A +AL  ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,445,848
Number of Sequences: 59808
Number of extensions: 458782
Number of successful extensions: 1170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)