Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--1000
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   138   3e-33
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    29   2.5  
U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    28   4.3  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  138 bits (334), Expect = 3e-33
 Identities = 70/88 (79%), Positives = 76/88 (86%), Gaps = 1/88 (1%)
 Frame = +2

Query: 2   EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAI 181
           EIID  L  +L DEVLKI PVQKQT AGQRTR KAFVAIGD+ GH+GLGVKCSKEVATAI
Sbjct: 89  EIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAI 147

Query: 182 RGAIILAKLSVLPVRRGYWGNKIG-SHT 262
           RGAI+ AKL+V+PVRRGYWGNKIG  HT
Sbjct: 148 RGAIVAAKLAVVPVRRGYWGNKIGLPHT 175



 Score =  113 bits (273), Expect = 7e-26
 Identities = 50/60 (83%), Positives = 54/60 (90%)
 Frame = +1

Query: 256 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLGKF 435
           PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST  LG F
Sbjct: 173 PHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNF 232


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 286 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 417
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 286 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 417
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 378 SHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDL 274
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 454 SVCGFSKISQGXQLNHELTCSNPVHQPSEEAS*ELAQTQYQYHEGQ 317
           ++C F++  +G     E+T S PVH        EL Q  Y Y+  Q
Sbjct: 101 TLCPFTEYKEGEAFTVEVTSSRPVHYNFRA---ELVQNFYLYNNSQ 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,596
Number of Sequences: 27780
Number of extensions: 320216
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)