Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--1000
(592 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 157 4e-39
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 157 5e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 156 9e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 156 9e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 156 9e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 156 9e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 44 6e-05
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 29 3.1
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.1
At3g01450.1 68416.m00069 expressed protein 29 3.1
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.1
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 5.4
At4g03740.1 68417.m00513 hypothetical protein 27 7.1
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 27 7.1
At1g72390.1 68414.m08373 expressed protein 27 9.4
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 157 bits (382), Expect = 4e-39
Identities = 72/88 (81%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAI 181
+IID +GPSL DEV+KIMPVQKQTRAGQRTR KAF+ +GD+NGH+GLGVKCSKEVATAI
Sbjct: 77 QIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAI 136
Query: 182 RGAIILAKLSVLPVRRGYWGNKIGS-HT 262
RGAIILAKLSV+P+RRGYWGNKIG HT
Sbjct: 137 RGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 107 bits (256), Expect = 7e-24
Identities = 47/68 (69%), Positives = 56/68 (82%)
Frame = +1
Query: 253 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLGK 432
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST LG
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220
Query: 433 FC*SHIRC 456
F + C
Sbjct: 221 FVKATFDC 228
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 157 bits (381), Expect = 5e-39
Identities = 73/88 (82%), Positives = 80/88 (90%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAI 181
+IID +GP+L DEV+KIMPVQKQTRAGQRTR KAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 86 QIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 145
Query: 182 RGAIILAKLSVLPVRRGYWGNKIGS-HT 262
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 146 RGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 107 bits (256), Expect = 7e-24
Identities = 47/68 (69%), Positives = 56/68 (82%)
Frame = +1
Query: 253 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLGK 432
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST LG
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229
Query: 433 FC*SHIRC 456
F + C
Sbjct: 230 FVKATFDC 237
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 156 bits (379), Expect = 9e-39
Identities = 73/88 (82%), Positives = 80/88 (90%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAI 181
+IID +GP+L DEV+KIMPVQKQTRAGQRTR KAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 182 RGAIILAKLSVLPVRRGYWGNKIGS-HT 262
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 107 bits (256), Expect = 7e-24
Identities = 47/68 (69%), Positives = 56/68 (82%)
Frame = +1
Query: 253 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLGK 432
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST LG
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 433 FC*SHIRC 456
F + C
Sbjct: 229 FVKATFDC 236
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 156 bits (379), Expect = 9e-39
Identities = 73/88 (82%), Positives = 80/88 (90%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAI 181
+IID +GP+L DEV+KIMPVQKQTRAGQRTR KAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 182 RGAIILAKLSVLPVRRGYWGNKIGS-HT 262
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 107 bits (256), Expect = 7e-24
Identities = 47/68 (69%), Positives = 56/68 (82%)
Frame = +1
Query: 253 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLGK 432
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST LG
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 433 FC*SHIRC 456
F + C
Sbjct: 229 FVKATFDC 236
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 156 bits (379), Expect = 9e-39
Identities = 73/88 (82%), Positives = 80/88 (90%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAI 181
+IID +GP+L DEV+KIMPVQKQTRAGQRTR KAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 182 RGAIILAKLSVLPVRRGYWGNKIGS-HT 262
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 107 bits (256), Expect = 7e-24
Identities = 47/68 (69%), Positives = 56/68 (82%)
Frame = +1
Query: 253 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLGK 432
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST LG
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 433 FC*SHIRC 456
F + C
Sbjct: 229 FVKATFDC 236
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 156 bits (379), Expect = 9e-39
Identities = 73/88 (82%), Positives = 80/88 (90%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAI 181
+IID +GP+L DEV+KIMPVQKQTRAGQRTR KAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 182 RGAIILAKLSVLPVRRGYWGNKIGS-HT 262
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 107 bits (256), Expect = 7e-24
Identities = 47/68 (69%), Positives = 56/68 (82%)
Frame = +1
Query: 253 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXLGK 432
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST LG
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 433 FC*SHIRC 456
F + C
Sbjct: 229 FVKATFDC 236
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/62 (29%), Positives = 39/62 (62%)
Frame = +2
Query: 38 DEVLKIMPVQKQTRAGQRTRXKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 217
+ V+++ V K + G++ + +A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 218 PV 223
V
Sbjct: 209 QV 210
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 253 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTXXL 426
K T P + G G+ V L PA GTG+++ + +L+MAGV++ GS L
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNAL 271
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 287 LPVTLQGTVCGFLSCYPSNLF 225
LP+ LQG + GF+ PSN++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 246 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALXRVRCPARVCF 67
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 66 CTGMILRTSSFR 31
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -2
Query: 255 LPILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALXRVRCPAR 76
L +LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 75 VCF 67
CF
Sbjct: 222 TCF 224
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 104 AFVAIGDNNGHIGLGVKCSKE 166
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 259 HTVPCKVTGKCGSVTVRL 312
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At4g03740.1 68417.m00513 hypothetical protein
Length = 345
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 273 QGHRQVWFRNSPADSCPSWYWYC 341
+ ++++WFR SCP W C
Sbjct: 60 RNNQEIWFRTFALGSCPHTLWPC 82
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 259 HTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 414
HT+ + + L PAP TG+ + V K +L +AG ++ + GS
Sbjct: 427 HTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSKVIGS 478
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 427 QGXQLNHELTCSNPVHQPSEE-AS*ELAQTQYQYHEGQESA 308
Q QL H+ P+ QPS++ A Q Q Q HE + A
Sbjct: 935 QQQQLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQA 975
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,487
Number of Sequences: 28952
Number of extensions: 306686
Number of successful extensions: 763
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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