Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0999
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    89   8e-19
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    42   9e-05
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    38   0.001
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.1  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   8.0  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.0  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 88.6 bits (210), Expect = 8e-19
 Identities = 63/166 (37%), Positives = 80/166 (48%), Gaps = 5/166 (3%)
 Frame = +1

Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGPSISASSARRLYFSVV*KCPLR----STNLP 339
           NPLF  RP++F IGQ IQP RDLSRFV  P       RR   ++  K P         L 
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 340 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQNSHQ 519
           ++      +  +++   T                       +S   + P       N   
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS---KKPYNVKYGLNHVV 140

Query: 520 AGREEEGA-LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
           A  E + A LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RL
Sbjct: 141 ALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARL 186



 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 34/56 (60%), Positives = 43/56 (76%)
 Frame = +3

Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 404
           L +  KWP+YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET
Sbjct: 46  LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +1

Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLRCTC 666
           +V+A D +PIE++L LP LC    VPY  V  K+ L   C
Sbjct: 51  IVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRAC 90


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 517 QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
           +A R+ E  LV++A D+ P++++  +P LC    VPY     K  L
Sbjct: 63  KAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELL 108


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 285 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 386
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 269 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 358
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 467 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 297
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,824
Number of Sequences: 5004
Number of extensions: 46752
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)