Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0999
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 91 8e-19
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 80 1e-15
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 74 1e-13
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 38 0.010
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 38 0.010
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 36 0.032
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 36 0.042
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.90
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 29 3.6
10_08_0933 + 21661209-21662813 28 8.4
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 8.4
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 91.1 bits (216), Expect = 8e-19
Identities = 62/163 (38%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Frame = +1
Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 351
NPLFEKRPK F IG + P +DL RFV P + +R K P R
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 352 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQNSHQAGR 528
+ L F + ++ + P N
Sbjct: 82 KNLATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 139
Query: 529 EEEGA-LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
E+ A LVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RL
Sbjct: 140 EQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARL 182
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/55 (63%), Positives = 44/55 (80%)
Frame = +3
Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 401
L + KWPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/55 (63%), Positives = 44/55 (80%)
Frame = +3
Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 401
L + KWPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
Score = 68.5 bits (160), Expect = 5e-12
Identities = 56/179 (31%), Positives = 75/179 (41%), Gaps = 2/179 (1%)
Frame = +1
Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 351
NPLFEKRPK F IG + P +DL RFV P + +R K P R
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 352 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQNSHQAGR 528
+ L F + ++ + P N
Sbjct: 66 KNLATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 123
Query: 529 EEEGA-LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLRCTCTPQDMHMLSSNK 702
E+ A LVVIAHDVDPIELV++LPALCRKM + + K + + C T ++ L +K
Sbjct: 124 EQSKAQLVVIAHDVDPIELVVWLPALCRKMEI---VHKKTASVLCLTTVKNEDKLEFSK 179
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = +1
Query: 529 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
+ + LVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RL
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 167
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/55 (49%), Positives = 40/55 (72%)
Frame = +3
Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 401
L + +WPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 45 LHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = +1
Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGP 261
NPLFEKRPK F IG + P +DL RFV P
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWP 52
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLRCTC 666
VV+A D +P+E++L LP L VPY V K L C
Sbjct: 52 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC 91
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLRCTC 666
VV+A D +P+E++L LP L VPY V K L C
Sbjct: 54 VVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC 93
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 35.9 bits (79), Expect = 0.032
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 526 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
R + L +IA ++ PI+++ +P LC + +PY V K L
Sbjct: 57 RRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDL 99
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 35.5 bits (78), Expect = 0.042
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 526 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
R L VIA ++ PI+++ +P LC + +PY V K L
Sbjct: 57 RRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDL 99
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 269 PHPAPEGCTSASSESAPSDQP 331
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 285 SGAGCGYTWATYKSGQVTSWLNALTNSKVLWPLLEERIHDLLG 157
+GAG GY W ++++ +W A+ SK LW L + L G
Sbjct: 105 TGAGQGYLWMSHRTPGSDTWELAV-RSKQLWEELAAEVDGLGG 146
>10_08_0933 + 21661209-21662813
Length = 534
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 695 ELSMCMSCGVQVHRRRDLPL-TMQYGTP 615
ELS C+S V HRRR P+ + +G P
Sbjct: 357 ELSACLSADVAEHRRRPPPIAVVSFGGP 384
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 217 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 125
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,402,322
Number of Sequences: 37544
Number of extensions: 359672
Number of successful extensions: 1133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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