Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0999
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   2e-15
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        73   2e-13
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        41   0.001
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          38   0.011
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   6.5  
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        28   8.5  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 33/56 (58%), Positives = 45/56 (80%)
 Frame = +3

Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 404
           L +  +WP+Y+++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET
Sbjct: 51  LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPET 106



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 32/41 (78%), Positives = 38/41 (92%)
 Frame = +1

Query: 532 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
           ++  LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RL
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARL 190



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 22/30 (73%), Positives = 23/30 (76%)
 Frame = +1

Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGP 261
           NPL EKRP+NF IG  IQP RDLSRFV  P
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWP 58


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 32/41 (78%), Positives = 38/41 (92%)
 Frame = +1

Query: 532 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
           ++  LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RL
Sbjct: 59  KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARL 99


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +1

Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
           +V+A D +P+E++L LP LC    VPY  V+ K+ L
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAAL 148


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 517 QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 645
           +A R+ E   V++A DV PI+++  +P +C    +PY  V  K
Sbjct: 108 KALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 482 PLWWRLIFLGNLSFSSFPQPLFPG 411
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 165 DRESSLREEAKELCYWSGH 221
           DR  ++ E  KE+CYW GH
Sbjct: 187 DRRKNMEERHKEMCYW-GH 204


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 293 TSASSESAPSDQPIYPDTG 349
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 165 DRESSLREEAKELCYWSGH 221
           DR  ++ E  KE+CYW GH
Sbjct: 137 DRRKNMEERHKEMCYW-GH 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,362,227
Number of Sequences: 59808
Number of extensions: 382319
Number of successful extensions: 1125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)