Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0999
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 86 3e-17
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 81 6e-16
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 81 8e-16
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 60 1e-09
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.028
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 33 0.15
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 31 1.1
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 31 1.1
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 7.5
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 85.8 bits (203), Expect = 3e-17
Identities = 40/89 (44%), Positives = 51/89 (57%)
Frame = +3
Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 416
+ + KWPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAK 111
Query: 417 XXXXXXXXXXXXXXXXXXXXXRPNTIRSG 503
RPNT+R G
Sbjct: 112 KNRLRARAEARAAGKKEEVTKRPNTVRHG 140
Score = 79.4 bits (187), Expect = 2e-15
Identities = 53/162 (32%), Positives = 68/162 (41%), Gaps = 1/162 (0%)
Frame = +1
Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 351
NPLFEKR +NF IGQ IQP +D++RFV P + K P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 352 RLQLR-AFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQNSHQAGR 528
R AF + + +R T +
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 529 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ L
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASL 191
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 81.4 bits (192), Expect = 6e-16
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +3
Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 404
+ + KWPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107
Score = 60.9 bits (141), Expect = 9e-10
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = +1
Query: 544 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ L
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASL 171
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +1
Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGP 261
NPLFEKR +NF IGQ IQP +D++RFV P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 81.0 bits (191), Expect = 8e-16
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +3
Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 404
+ + KWPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +1
Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGP 261
NPLFEKR +NF IGQ IQP +D++RFV P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +3
Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 350
+ + KWPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +1
Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGP 261
NPLFEKR +NF IGQ IQP +D++RFV P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 544 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLRCTC 666
++V+A D +P+E++L LP LC VPY V+ K+ L C
Sbjct: 53 IIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRAC 93
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -1
Query: 446 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 327
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +1
Query: 526 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
R E + ++A +V PI++ +P +C + +PY + + +L
Sbjct: 81 RRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQL 123
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 484 PTPSDPAQNSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVK 639
P+PS+P S + E +++ AHD DP++ + P + + +P+ VK
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAVK 501
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 484 PTPSDPAQNSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVK 639
P+PS+P S + E +++ AHD DP++ + P + + +P+ VK
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAVK 501
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 319 LRSTNLPRHWTRLQLRA 369
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,868,862
Number of Sequences: 27780
Number of extensions: 278063
Number of successful extensions: 789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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