Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0999
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 82 4e-16
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 81 5e-16
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 40 0.001
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.009
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.009
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.009
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 37 0.011
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 30 1.7
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.0
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 9.2
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 81.8 bits (193), Expect = 4e-16
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = +3
Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 401
L + KWPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 42 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/42 (80%), Positives = 38/42 (90%)
Frame = +1
Query: 529 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRL
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRL 180
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGP-SISASSARRL 291
NPLFE+RPK F IG + P +DLSR++ P SI +R+
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 60
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 81.4 bits (192), Expect = 5e-16
Identities = 36/55 (65%), Positives = 44/55 (80%)
Frame = +3
Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 401
L + KWPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 43 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/42 (80%), Positives = 38/42 (90%)
Frame = +1
Query: 529 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRL
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRL 181
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGP-SISASSARRL 291
NPLFE+RPK F IG + P +DLSR++ P SI +R+
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +2
Query: 512 VTKLVEKKKAHXXXXXXXXXXXXXXXXCQRYAVKWVYHTALSRASPAFGALVHRKTCTCL 691
VT L+E+ KA K + + GA+VH+KT +CL
Sbjct: 134 VTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCL 193
Query: 692 ALTNV 706
LT V
Sbjct: 194 CLTTV 198
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 526 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
R + L VIA ++ PI+++ LP LC + GVPY V K L
Sbjct: 63 RRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDL 105
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLRCTC 666
VV+A D +P+E++L LP L VPY V K L C
Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC 125
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLRCTC 666
VV+A D +P+E++L LP L VPY V K L C
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC 93
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLRCTC 666
VV+A D +P+E++L LP L VPY V K L C
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC 93
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLRCTC 666
+V+A D +P+E++L LP L VPY V K L C
Sbjct: 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC 93
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 285 SGAGCGYTWATYKSGQVTSW 226
SG GCG+ AT +SG++ +W
Sbjct: 69 SGGGCGFAMATAESGKLITW 88
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 497 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 339
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 458 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 363
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,192,192
Number of Sequences: 28952
Number of extensions: 265527
Number of successful extensions: 748
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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