Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0998
         (610 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CZ63 Cluster: Chromosome undetermined scaffold_317, w...    36   0.99 
UniRef50_Q5B6R1 Cluster: Putative uncharacterized protein; n=2; ...    35   1.3  
UniRef50_A5V9A0 Cluster: TonB-dependent receptor precursor; n=1;...    33   7.0  
UniRef50_Q80FI2 Cluster: Putative large T antigen; n=4; unclassi...    32   9.3  

>UniRef50_A0CZ63 Cluster: Chromosome undetermined scaffold_317,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_317,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 254

 Score = 35.5 bits (78), Expect = 0.99
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = -1

Query: 445 LKQRGDHSLLSTQCNAISAQLNQSVNYLHYRLRVSEIRYF*TVSTYRCLA 296
           +KQ  D  L++T  +  + +LN S NYL+ +L++S I Y+  +   R L+
Sbjct: 121 IKQTDDKQLITTLISEQTKKLNHSFNYLYEQLQLSSINYYQILENNRKLS 170


>UniRef50_Q5B6R1 Cluster: Putative uncharacterized protein; n=2;
           Trichocomaceae|Rep: Putative uncharacterized protein -
           Emericella nidulans (Aspergillus nidulans)
          Length = 464

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -1

Query: 193 LVRLLNFCSCHTQLNYVVVMGVHRHQSENGRSLHGRRQDGGTHSPGHDTFNDQWK*TFW 17
           L+ + + C CH Q  + ++        E G +   RR+    HS GH    + W+ T+W
Sbjct: 138 LLAITDHCYCHEQSAHRLIQTAVNLALETGMN---RRRFASEHSYGHSVLEESWRRTYW 193


>UniRef50_A5V9A0 Cluster: TonB-dependent receptor precursor; n=1;
           Sphingomonas wittichii RW1|Rep: TonB-dependent receptor
           precursor - Sphingomonas wittichii RW1
          Length = 842

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 22/60 (36%), Positives = 32/60 (53%)
 Frame = +2

Query: 302 ASIRTYRLKIAYFANPQSIMKVVDGLVQLS*DCVTLRTEQAMIASLLQWVVVTQTILSRD 481
           A + ++RL  AY  N   I+KV+D   QL+   VTL   QA    L+  +  T+ +LS D
Sbjct: 686 AGLGSFRLNAAYSYNKTKILKVIDNPAQLAPLNVTLFGRQAQ-RDLVAALPRTKLVLSND 744


>UniRef50_Q80FI2 Cluster: Putative large T antigen; n=4;
           unclassified Polyomavirus|Rep: Putative large T antigen
           - Goose hemorrhagic polyomavirus
          Length = 636

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -1

Query: 289 IIFRYCMLQCYCTASRLNSLKFVLLFYCSQY*LVRLLNFCSCHTQLNYVVVMGVHRH 119
           +I ++   + Y TA       F+L+   +   +  L+NFC  H  ++  VV GV +H
Sbjct: 172 LILQHFSTKGYVTAQWAGGYAFMLIILANSTRVSTLINFCCKHCTVSPYVVRGVKKH 228


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,919,949
Number of Sequences: 1657284
Number of extensions: 11057526
Number of successful extensions: 23937
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23928
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)