Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0998
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    25   0.50 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.1  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 8   AFPPKSLFPLVVKRVVTGRVGAAILPPTVKASTVLALVSMDSHDYNVVELRMTA 169
           AF PK     V    + G VG   +P     S VL ++++ ++D++ +    TA
Sbjct: 163 AFAPKGYLLTVAVNSIPGEVGGYDIP---AMSNVLDIINVMTYDFHAMWAGFTA 213


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -3

Query: 560 TKYSCVHYCTLDSIMLAYGIDWISNPDPVIK*SALL 453
           + + C+H   L        I W+ N +P ++   LL
Sbjct: 81  SSFECIHLSVLHKCYDYDAIPWLQNVEPNLRPKLLL 116


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 584 LMYPNFRDTKYSCVHY 537
           L YP++ +   SC HY
Sbjct: 359 LTYPSYYNQDVSCTHY 374


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 93  TVGGKMAAPTRPVTT 49
           T G  MA+P  P+TT
Sbjct: 111 TSGAVMASPPMPITT 125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,195
Number of Sequences: 336
Number of extensions: 2818
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)