Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0998
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    27   1.6  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   2.8  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   8.7  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   8.7  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +2

Query: 2   LFAFPPKSLFPLVVKRVVTGRVGAAILPPTVKA 100
           LFA+PPKS+ P   K V   +V  A+L  TVKA
Sbjct: 793 LFAYPPKSVQP-TAKTV--QKVETAVLSTTVKA 822


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 113 RERSKPSR*AARWRHPLARSRH 48
           R+R + SR ++R RHP +RSRH
Sbjct: 149 RDRDRSSR-SSRSRHPSSRSRH 169


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 427 HSLLSTQCNAISAQLNQSVNYLHYRL 350
           HS + T CN I++  N+    +H+ L
Sbjct: 100 HSQMGTSCNKINSNSNKGKENMHFVL 125


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 250 LYNNIVTCNTGR*YTKLSIDTYLPFKNSVFR*PA 351
           LY  IV+C  G+ Y K SI   L  ++SV + P+
Sbjct: 47  LYPPIVSCGLGKLYNKASILQMLLDRSSVPKSPS 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,350
Number of Sequences: 5004
Number of extensions: 47738
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)