Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0998
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43754| Best HMM Match : Peptidase_M13 (HMM E-Value=6.9e-07)         29   2.9  
SB_37732| Best HMM Match : RVT_1 (HMM E-Value=2e-23)                   29   2.9  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_43754| Best HMM Match : Peptidase_M13 (HMM E-Value=6.9e-07)
          Length = 174

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 187 RLLNFCSCHTQLNYVVVMGVHRHQSENGRSLHGRRQD 77
           R L FCSC   ++Y  +  V  H+  +G    GR+ D
Sbjct: 42  RDLKFCSCRRSISYGAIGHVLGHELTHGFDTTGRKYD 78


>SB_37732| Best HMM Match : RVT_1 (HMM E-Value=2e-23)
          Length = 951

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 430 RLVASVGSSNADYFITGSGFDIQSMPYANIMESN 531
           R+     ++ ADYF+ GS  + +S PY  +  SN
Sbjct: 727 RITNKTSTTYADYFLYGSKLERESHPYLGVQFSN 760


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
 Frame = -1

Query: 466 SLRYYYPLKQRGDHSLLSTQCNAISAQLNQSVNYLHYRLRVS-----EIRYF*TVSTYRC 302
           S+RY   L  R    L    C  +S +    + Y+HY L V+      +RY  +V+ + C
Sbjct: 291 SVRYCQLLSVRYCPLLSVRYCPLLSVRYCPLL-YVHYCLSVTVCLLLSVRYCLSVTVHCC 349

Query: 301 LA*YIIFRYCMLQC--YCTASRLNSLKFVLLFYCSQY*LVRLLNFCSC 164
           L+  +   YC+     YC +  ++    V + YC    +  LL+   C
Sbjct: 350 LS--VTVHYCLSVTVHYCLSVTVHCCLSVTVHYCLSVTVCLLLSITVC 395


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 567 SRH*VQL-RALLHIRFHNVGIRHRLDIEPG 481
           S+H V+L RA+L ++  N  +RHRL   PG
Sbjct: 2   SQHIVRLQRAILQVKNENELLRHRLATSPG 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,530,747
Number of Sequences: 59808
Number of extensions: 363027
Number of successful extensions: 790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)