Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0998
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.4  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 481 SGFDIQSMPYANIMESNVQ*CTQLYLVSRKLG 576
           SGF ++S+    I+ SNVQ C QL      LG
Sbjct: 789 SGF-MESLDNHWILRSNVQQCEQLEKAPNTLG 819


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = -2

Query: 492 IEPGSRDKIVCVTTTH*SNEAIIACSVRNVTQSQLS*TNPSTTF 361
           + P  RD + C       +  I  CSV +V  +    T+P   F
Sbjct: 111 VNPYDRDSLSCWLQMTKHHNFIKVCSVNDVNMTITELTDPVKEF 154


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 111 RTVEAFTVGGKMAAPTRPVTT 49
           + VE+F  GG +  P  P  T
Sbjct: 145 KLVESFPRGGSLPTPVTPTPT 165


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -1

Query: 127 HRHQSENGRSLHGRRQDGGTHSPGHDTFNDQ 35
           H H+  +    HG    G T  P H   + Q
Sbjct: 327 HPHRGSSPHHQHGNHTMGPTMGPPHHHHHHQ 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,209
Number of Sequences: 438
Number of extensions: 3300
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)