Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0998
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66280.1 68414.m07527 glycosyl hydrolase family 1 protein con...    29   1.8  
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ...    29   2.4  
At5g18590.2 68418.m02198 kelch repeat-containing protein identic...    29   3.2  
At5g18590.1 68418.m02197 kelch repeat-containing protein identic...    29   3.2  
At1g66270.2 68414.m07524 beta-glucosidase (PSR3.2) nearly identi...    28   4.2  
At1g66270.1 68414.m07523 beta-glucosidase (PSR3.2) nearly identi...    28   4.2  
At3g09260.1 68416.m01100 glycosyl hydrolase family 1 protein con...    27   9.7  

>At1g66280.1 68414.m07527 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 524

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 446 WVVVTQTILSRDPGSISSRCRMPTLWNLMCS-NARNCT 556
           +V  T T   +  G+I+  CR P LW++ C  N   C+
Sbjct: 45  FVFGTATAAFQVEGAINETCRGPALWDIFCKRNPERCS 82


>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
           contains Pfam profile: PF01363 FYVE zinc finger
          Length = 601

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 133 GVHRHQSENGRSLHGRRQDGGTHSPGHDTFND 38
           G +R +S+ G  L+G+R D G +    D++ D
Sbjct: 212 GYNRSRSDLGSDLYGKRSDSGEYPAFEDSYGD 243


>At5g18590.2 68418.m02198 kelch repeat-containing protein identical
           to RanGAP1 interacting protein (GI:21950739)
           [Arabidopsis thaliana]; similar to Tip elongation
           aberrant protein 1 (Cell polarity protein tea1)
           (SP:P87061) [Schizosaccharomyces pombe]; contains Pfam
           PF01344: Kelch motif (5 repeats)
          Length = 708

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 105 VEAFTVG-GKMAAPTRPVTTRLTTSGNRLFGGNAKS 1
           V+AFT+   K  +PT P TT     G  LFG  + S
Sbjct: 371 VDAFTIDKNKSESPTHPQTTSKKNPGRLLFGKRSSS 406


>At5g18590.1 68418.m02197 kelch repeat-containing protein identical
           to RanGAP1 interacting protein (GI:21950739)
           [Arabidopsis thaliana]; similar to Tip elongation
           aberrant protein 1 (Cell polarity protein tea1)
           (SP:P87061) [Schizosaccharomyces pombe]; contains Pfam
           PF01344: Kelch motif (5 repeats)
          Length = 708

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 105 VEAFTVG-GKMAAPTRPVTTRLTTSGNRLFGGNAKS 1
           V+AFT+   K  +PT P TT     G  LFG  + S
Sbjct: 371 VDAFTIDKNKSESPTHPQTTSKKNPGRLLFGKRSSS 406


>At1g66270.2 68414.m07524 beta-glucosidase (PSR3.2) nearly identical
           to GI:2286069 from (Arabidopsis thaliana) (Plant Mol.
           Biol. 34 (1), 57-68 (1997)); similar to thioglucoside
           glucohydrolase (GI:984052) [Arabidopsis thaliana]
          Length = 522

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 458 TQTILSRDPGSISSRCRMPTLWNLMC-SNARNCT 556
           T T   +  G+I+  CR P LW++ C  N   C+
Sbjct: 49  TATAAFQVEGAINETCRGPALWDIYCRRNPERCS 82


>At1g66270.1 68414.m07523 beta-glucosidase (PSR3.2) nearly identical
           to GI:2286069 from (Arabidopsis thaliana) (Plant Mol.
           Biol. 34 (1), 57-68 (1997)); similar to thioglucoside
           glucohydrolase (GI:984052) [Arabidopsis thaliana]
          Length = 524

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 458 TQTILSRDPGSISSRCRMPTLWNLMC-SNARNCT 556
           T T   +  G+I+  CR P LW++ C  N   C+
Sbjct: 49  TATAAFQVEGAINETCRGPALWDIYCRRNPERCS 82


>At3g09260.1 68416.m01100 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           almost identical to beta-glucosidase GI:1732570 from
           [Arabidopsis thaliana]; similar to beta-glucosidase 1
           (GI:12043529) [Arabidopsis thaliana]
          Length = 524

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 458 TQTILSRDPGSISSRCRMPTLWNLMC 535
           T T   +  G+I+  CR P LW++ C
Sbjct: 48  TATAAYQVEGAINETCRGPALWDIYC 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,649,688
Number of Sequences: 28952
Number of extensions: 242033
Number of successful extensions: 522
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)