Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0997
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   1.0  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    27   2.4  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   2.4  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   4.1  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   5.5  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    26   5.5  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   5.5  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   9.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.5  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 198 RGHKRMGEGGSPGGARLSHPRRNIRAPYSAN 290
           RG    G G   GGAR  +P R   AP+S N
Sbjct: 465 RGGFGGGRGRGRGGARSGNPNRGSVAPFSGN 495


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 22/85 (25%), Positives = 42/85 (49%)
 Frame = +2

Query: 245 AVPPSEKHPRAILGELSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMFTGELA 424
           A+  S+ +   I   LS    H    D+V      ++FAH+  L+A S YF++ F+ +L 
Sbjct: 143 AIDESQPYASHITSLLSNSALHFTT-DIVFAGQYGRVFAHKFYLAARSSYFKSKFS-KLG 200

Query: 425 ESRATEVTIRDVDEQAMEQLVEFCY 499
            S   E+ ++   ++  E ++ + Y
Sbjct: 201 PSE-HEIEVKHFAKE-FESILRYLY 223


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 209  FVAACVTQLQTQRGRSPTPHGVNL*RFCSTPRTNVPKGKR 90
            F AA  +       +SP P+G+      S  +TN P G++
Sbjct: 1110 FGAATPSAFNASASQSPAPNGIQFNLGSSNSQTNAPPGRK 1149


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 500 TAHSSSRRVTCRPCSRLRACCSCKRSRT-CAASS 598
           T  SSS  +T +    L AC SC++ +T C A S
Sbjct: 7   TRQSSSSLLTFKRKRALEACDSCRKQKTRCLAGS 40


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 256 GWDSRAPPGDPPSPILLWPRALPSC 182
           GW   A P     P L+WP  L SC
Sbjct: 225 GWSGLALPILVYPPTLIWPSVLSSC 249


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 358 CSQSNPISMQPVLPSDVHWGTGRVSRHRSHDP 453
           C++S PI    ++  D+ +GTG V    +HDP
Sbjct: 362 CNRSIPIICDDIIV-DMEFGTGAVKITPAHDP 392


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 134 RFCSTPRTNVPKGKRNI-YNKSQC 66
           R C TP TN+   K+NI Y +  C
Sbjct: 23  RLCFTPPTNLHNNKKNIFYTRYDC 46


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = -2

Query: 55  PFNRT--WISRFNVSNVY 8
           PFNR   W+S F++ NVY
Sbjct: 369 PFNREALWLSNFDMENVY 386


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 197 CVTQLQTQRGRSPTPHGVNL*RFCSTPRTN 108
           CV +    R  S TPHG N  R  STP +N
Sbjct: 424 CVKKQMNYREESHTPHG-NTTRKTSTPVSN 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,772
Number of Sequences: 5004
Number of extensions: 48262
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)