Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0997
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      50   2e-08
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          36   3e-04
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 28/75 (37%), Positives = 38/75 (50%)
 Frame = +2

Query: 275 AILGELSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIR 454
           +I      LR   +  DV L    R L AHRV+LSACSPYFR +   +    +   + ++
Sbjct: 17  SITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELL--KSTPCKHPVIVLQ 74

Query: 455 DVDEQAMEQLVEFCY 499
           DV    +  LVEF Y
Sbjct: 75  DVAFSDLHALVEFIY 89


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +2

Query: 323 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIRDVDEQAMEQLVEFCY 499
           DV L      L AH+V+LSACS YF+ +      +   T +  +DV    ++ ++EF Y
Sbjct: 37  DVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCK-HPTIIMPQDVCFNDLKFIIEFVY 94


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 554 ACCSCKRSRTCAASSSSVTGLLQ 622
           +CC+   + TC+ S+S   G ++
Sbjct: 162 SCCNSPENNTCSISNSYTNGCVE 184


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 355 EFPVSNVEHDIA*LTMTSQCG 293
           ++ +SN+EH+   L +TS  G
Sbjct: 505 DYDISNIEHEALLLVITSTFG 525


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 187 SCKRSGGEAQPHTESIFDDFVPPHEQT 107
           +C R   EA+P + S     V  H+Q+
Sbjct: 267 TCDRPSDEAEPSSTSKKSGIVRSHQQS 293


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 273 APYSANSPHCDVIVSYAMS 329
           APY  NSP    ++ Y +S
Sbjct: 898 APYDGNSPIKRYVIEYKIS 916


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,799
Number of Sequences: 438
Number of extensions: 3692
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)