Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0997
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g21010.1 68418.m02497 speckle-type POZ protein-related contai... 55 5e-08
At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family pr... 52 3e-07
At2g39760.1 68415.m04882 speckle-type POZ protein-related contai... 50 2e-06
At3g43700.1 68416.m04664 speckle-type POZ protein-related contai... 48 4e-06
At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Inter... 48 7e-06
At1g21780.1 68414.m02726 BTB/POZ domain-containing protein Conta... 48 7e-06
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 44 1e-04
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter... 43 2e-04
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 43 2e-04
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 43 2e-04
At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family pr... 42 4e-04
At3g03740.1 68416.m00379 speckle-type POZ protein-related contai... 40 0.001
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 39 0.003
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 37 0.013
At2g46260.1 68415.m05752 BTB/POZ domain-containing protein conta... 36 0.018
At4g04090.1 68417.m00578 speckle-type POZ protein-related contai... 35 0.041
At3g61600.2 68416.m06901 BTB/POZ domain-containing protein conta... 35 0.041
At3g61600.1 68416.m06900 BTB/POZ domain-containing protein conta... 35 0.041
At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ... 32 0.29
At2g30520.1 68415.m03717 signal transducer of phototropic respon... 32 0.38
At2g40440.1 68415.m04990 BTB/POZ domain-containing protein conta... 31 0.67
At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family pr... 31 0.67
At1g02980.1 68414.m00268 cullin family protein similar to cullin... 31 0.67
At4g02570.1 68417.m00351 cullin family protein similar to cullin... 31 0.88
At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ... 31 0.88
At5g52120.1 68418.m06469 F-box family protein / SKP1 interacting... 30 1.2
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 30 1.2
At5g19330.2 68418.m02304 armadillo/beta-catenin repeat family pr... 30 1.5
At3g56230.1 68416.m06249 speckle-type POZ protein-related contai... 29 2.0
At1g04390.1 68414.m00429 expressed protein 29 2.0
At4g00170.1 68417.m00018 vesicle-associated membrane family prot... 29 2.7
At5g54880.1 68418.m06836 DTW domain-containing protein contains ... 29 3.6
At3g59250.1 68416.m06605 F-box family protein contains F-box dom... 28 4.7
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 28 4.7
At1g23270.1 68414.m02911 hypothetical protein 28 4.7
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 28 6.2
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr... 27 8.2
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ... 27 8.2
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ... 27 8.2
>At5g21010.1 68418.m02497 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 410
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/59 (38%), Positives = 39/59 (66%)
Frame = +2
Query: 323 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIRDVDEQAMEQLVEFCY 499
D+ N+A K AH+++L+A SP+F++ F E E+ TEVTI D++ + + L++F Y
Sbjct: 199 DITFNIAGEKFLAHKLVLAARSPFFKSKFFSEF-EANNTEVTINDLEPKVFKALLQFMY 256
>At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 710
Score = 52.0 bits (119), Expect = 3e-07
Identities = 32/86 (37%), Positives = 42/86 (48%)
Frame = +2
Query: 245 AVPPSEKHPRAILGELSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMFTGELA 424
A PPS R LGE + L DV V R +AHR+ L A S FRAMF G
Sbjct: 519 AAPPSPTQ-RVYLGEQYV--NNATLSDVTFLVEGRTFYAHRICLLASSDAFRAMFDGGYR 575
Query: 425 ESRATEVTIRDVDEQAMEQLVEFCYT 502
E A ++ I ++ + E ++ F YT
Sbjct: 576 EKDARDIEIPNIKWEVFELMMRFIYT 601
>At2g39760.1 68415.m04882 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 408
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 320 CDVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIRDVDEQAMEQLVEFCY 499
CD+ V + AH++IL+A SP FRA F G + + + I D++ + ++ F Y
Sbjct: 194 CDIAFQVGDETYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVIDDIEPSIFKAMLSFIY 253
Query: 500 T 502
T
Sbjct: 254 T 254
>At3g43700.1 68416.m04664 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 415
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +2
Query: 323 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIRDVDEQAMEQLVEFCY 499
DV +VA K AH+++L+A S +FR+MF LAE+ ++V I D++ + + L+ F Y
Sbjct: 206 DVTFDVAGEKFQAHKLVLAARSQFFRSMFYNTLAENN-SDVVISDLEPKVFKALLHFMY 263
>At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 329
Score = 47.6 bits (108), Expect = 7e-06
Identities = 19/59 (32%), Positives = 35/59 (59%)
Frame = +2
Query: 323 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIRDVDEQAMEQLVEFCY 499
D+ +N ++ + AHR +L+A SP FR+MF +L E +E+ + D+ A + + + Y
Sbjct: 165 DITINASDGSIGAHRAVLAARSPVFRSMFLHDLKEKELSEINVLDMPLDACQAFLSYIY 223
>At1g21780.1 68414.m02726 BTB/POZ domain-containing protein Contains
similarity to gb|AJ000644 SPOP (speckle-type POZ
protein) from Homo sapiens and contains a PF|00651
BTB/POZ domain. ESTs gb|T75841, gb|R89974, gb|R30221,
gb|N96386, gb|T76457, gb|AI100013 and gb|T76456 come
from this gene;supported by full-length
Length = 326
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/90 (28%), Positives = 44/90 (48%)
Frame = +2
Query: 230 PRWRAAVPPSEKHPRAILGELSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMF 409
P W + L LS + L DV+++ A+ L AH+ ILSA S F++MF
Sbjct: 131 PVWPTDATMQSISTQTTLKCLSRMLEESILTDVIIHTADGTLSAHKAILSASSTVFKSMF 190
Query: 410 TGELAESRATEVTIRDVDEQAMEQLVEFCY 499
+L E ++ + I D+ ++ L+ + Y
Sbjct: 191 HHDLMEKESSTIHIDDMSRESCMALLSYLY 220
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/83 (30%), Positives = 37/83 (44%)
Frame = +2
Query: 323 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIRDVDEQAMEQLVEFCYT 502
DV+ V R + AHRVILSA SP+F+ F E + R + + A+ L+ F Y+
Sbjct: 174 DVMFYVQGRPIEAHRVILSARSPFFKQKFENEWKDRREVRFSKEKLSYPALCSLIHFFYS 233
Query: 503 AHSSSRRVTCRPCSRLRACCSCK 571
R+ C C+
Sbjct: 234 DRLEISVDDMEDLVRICKVCKCE 256
Score = 33.9 bits (74), Expect = 0.095
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Frame = +2
Query: 317 LCDVVLNVANRKLFAHRVILSACSPYFRAMFT---------GELAESRATEVTIRDVDEQ 469
L DV + V R + H+VIL++ S YFRA + L + D+ +
Sbjct: 337 LADVCVRVDKRNFYCHQVILASRSEYFRARLSRVNDFHEGKNGLPGDTLPFLEEHDLSAE 396
Query: 470 AMEQLVEFCYT 502
A E+++E+ YT
Sbjct: 397 AFEKMIEYMYT 407
>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 243
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +2
Query: 311 RELCDVVL-----NVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIRDVDEQAM 475
R DVVL N + + AH+ +L + SP F+AM E+ ES + + I DV A+
Sbjct: 61 RSFTDVVLIASEDNAGSPPIPAHKSVLVSRSPVFKAMLENEMEESLSGTIKISDVSYDAL 120
Query: 476 EQLVEFCYTAHS 511
V + YTA +
Sbjct: 121 RTFVYYLYTAEA 132
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +2
Query: 281 LGELSALRRHRELCDVVLNVANRKLF--AHRVILSACSPYFRAMFTGELAESRATEVTIR 454
+G+L L E D+ + +++ L +H+VILS S F MFT ++ES ++ + +
Sbjct: 338 VGKLVKLYSTGEYSDIKIYLSDHSLTFQSHKVILSLWSVAFAKMFTNGMSESHSSTIYLT 397
Query: 455 DVDEQAMEQLVEFCYT 502
DV +A + ++ F Y+
Sbjct: 398 DVSPEAFKAMMNFMYS 413
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +2
Query: 281 LGELSALRRHRELCDVVLNVANRKLF--AHRVILSACSPYFRAMFTGELAESRATEVTIR 454
+G+L L E D+ + +++ L +H+VILS S F MFT ++ES ++ + +
Sbjct: 338 VGKLVKLYSTGEYSDIKIYLSDHSLTFQSHKVILSLWSVAFAKMFTNGMSESHSSTIYLT 397
Query: 455 DVDEQAMEQLVEFCYT 502
DV +A + ++ F Y+
Sbjct: 398 DVSPEAFKAMMNFMYS 413
>At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 709
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +2
Query: 317 LCDVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIRDVDEQAMEQLVEFC 496
+ DV + ++ +AH++ L A S FRAMF G E A V I ++ + E +++F
Sbjct: 539 MSDVTFLIDGKQFYAHKIGLVASSDIFRAMFDGLYKERNAQNVEIPNIRWEVFELMMKFI 598
Query: 497 YT 502
Y+
Sbjct: 599 YS 600
>At3g03740.1 68416.m00379 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 465
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +2
Query: 323 DVVLNVANRKLFAHRVILSACSPYFRAMF---TGELAESRATEVTIRDVDEQAMEQLVEF 493
D+ NV+ K AHR++L+A SP F + F TGE E R EVT D++ + + L+ +
Sbjct: 217 DITFNVSGEKFRAHRLVLAARSPVFESEFLDVTGE--EDRDIEVT--DMEPKVFKALLHY 272
Query: 494 CY 499
Y
Sbjct: 273 IY 274
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 269 PRAILGE-LSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEV 445
P + LG+ L L + CDVV V AH+++L+ SP F A G L + +
Sbjct: 185 PVSNLGQQLGNLLESGKGCDVVFQVDGETFNAHKLVLATRSPVFNAQLFGPLGDRNTKCI 244
Query: 446 TIRDVD 463
TI D++
Sbjct: 245 TIEDME 250
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 323 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIRDVDEQAMEQLVEFCY 499
DV V AH+++L+A S FRA G L + I DV + L+ F Y
Sbjct: 203 DVTFEVDGETFPAHKLVLAARSAVFRAQLFGPLRSENTNCIIIEDVQAPIFKMLLHFIY 261
>At2g46260.1 68415.m05752 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 561
Score = 36.3 bits (80), Expect = 0.018
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 320 CDVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIRDVDEQAMEQLVEFCY 499
C V+ V ++L IL+A SP+F +F+ + ES VT+R + Q L+E
Sbjct: 145 CSTVVRV--KELHISSPILAAKSPFFYKLFSNGMRESEQRHVTLR-ISAQEEGALMELLN 201
Query: 500 TAHSSSRRVTCRP 538
+S+S VT P
Sbjct: 202 FMYSNSLSVTTAP 214
>At4g04090.1 68417.m00578 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
POZ protein (SP:O43791) [Homo sapiens]
Length = 192
Score = 35.1 bits (77), Expect = 0.041
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Frame = +2
Query: 359 AHRVILSACSPYFRAMFTGE--LAESRATEVTIRDVDEQAMEQLVEFCYT---------- 502
AH+ ILSA S F MF + A S+ +T+ ++ + +E V+F Y+
Sbjct: 40 AHKRILSARSEVFEEMFESDKYKASSKLETITLSEMKHEVLEAFVDFTYSDGSMLSEKAK 99
Query: 503 AHSSSRRVTCRPCSRLRACCSCKRSRTCAASSSSVTGLLQL 625
H+ S + R C C++ + + S+ +LQL
Sbjct: 100 QHAMSLYSAAKDYEIPRLWCLCRKELIASLNMSNALRVLQL 140
>At3g61600.2 68416.m06901 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 561
Score = 35.1 bits (77), Expect = 0.041
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 320 CDVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIR--DVDEQAMEQLVEF 493
C V+ V ++L IL+A SP+F +F+ + ES VT+R +E A+ +L+ F
Sbjct: 147 CSTVVRV--KELHISSPILAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNF 204
Query: 494 CYT 502
Y+
Sbjct: 205 MYS 207
>At3g61600.1 68416.m06900 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 561
Score = 35.1 bits (77), Expect = 0.041
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 320 CDVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIR--DVDEQAMEQLVEF 493
C V+ V ++L IL+A SP+F +F+ + ES VT+R +E A+ +L+ F
Sbjct: 147 CSTVVRV--KELHISSPILAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNF 204
Query: 494 CYT 502
Y+
Sbjct: 205 MYS 207
>At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 491
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 290 LSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMFTG 415
L+ L + DV +V R + AHR IL+A S +FR F G
Sbjct: 16 LNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCG 57
>At2g30520.1 68415.m03717 signal transducer of phototropic response
(RPT2) identical to RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112
Length = 593
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 323 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIRDV--DEQAMEQLVEFC 496
DVV+ V H+ +L A S Y R + E +S T + + D+ + E+ +FC
Sbjct: 33 DVVVEVGEANFSLHKFMLVAKSNYIRKLIM-ESKDSDVTRINLSDIPGGPEIFEKAAKFC 91
Query: 497 Y 499
Y
Sbjct: 92 Y 92
>At2g40440.1 68415.m04990 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain;
Length = 194
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 359 AHRVILSACSPYFRAMFTGE--LAESRATEVTIRDVDEQAMEQLVEFCYT 502
AH+++LSA S F+ M + A ++ +T+ ++ + +E +EF Y+
Sbjct: 42 AHKLVLSARSEVFKKMLESDEIKASAQLETITLCEMKHEELEAFIEFIYS 91
>At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family
protein component of the pyruvate dehydrogenase complex
E3, contains PF|00010 helix-loop-helix DNA-binding
domain. ESTs gb|T45640 and gb|T22783 come from this gene
Length = 302
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 114 SWGGTKSSKIDSVWGWASPPLRLQL--GNARGHKRMGE--GGSPGG 239
++ G+ S + + G PP+ LQL GN H MG GG P G
Sbjct: 30 NFSGSSGSGLSGIGGVGPPPMMLQLGSGNEGNHNHMGAIGGGGPVG 75
>At1g02980.1 68414.m00268 cullin family protein similar to cullin 1
[Homo sapiens] GI:3139077; contains Pfam profile
PF00888: Cullin family
Length = 742
Score = 31.1 bits (67), Expect = 0.67
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Frame = +2
Query: 224 RIPRWRAAVPPSEKHPRAILGELSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRA 403
++ R R +PP ++ + I+ ++ RR+ +V + +RK+ H+ ++S C +
Sbjct: 648 KMRRIRVPLPPMDERKK-IVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEHLSK 706
Query: 404 MFTGE--LAESRATEVTIRDVDEQAMEQLVEFCYTA 505
MF + + + R ++ RD E+ + F Y A
Sbjct: 707 MFKPDIKMIKKRIEDLISRDYLERDTDNPNTFKYLA 742
>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
[Homo sapiens] GI:3639052; contains Pfam profile
PF00888: Cullin family
Length = 738
Score = 30.7 bits (66), Expect = 0.88
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = +2
Query: 224 RIPRWRAAVPPSEKHPRAILGELSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRA 403
R+ R + +PP ++ + ++ ++ RR+ +V + +RK+ H+ ++S C
Sbjct: 644 RMRRIKIPLPPVDERKK-VVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSR 702
Query: 404 MFTGEL--AESRATEVTIRDVDEQAMEQLVEFCYTA 505
MF ++ + R ++ RD E+ E F Y A
Sbjct: 703 MFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738
>At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 467
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 281 LGELSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMF 409
L L+ L + DV +V R + AHR IL+A S +FR F
Sbjct: 14 LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFF 56
>At5g52120.1 68418.m06469 F-box family protein / SKP1 interacting
partner 3-related contains Pfam profile PF00646: F-box
domain
Length = 291
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 123 GTKSSKIDSVWGWASPPLRLQLGNARGHKRMGE 221
G K+ +D V GW P+R QL + G M E
Sbjct: 195 GRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSE 227
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary 28614
Length = 1457
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -3
Query: 609 VTLEELAAHVLDLLQLQQARSREQGLHVTLLDDE 508
VT E LAA V+D Q+ + S+E+ LH+ DD+
Sbjct: 1245 VTKEGLAARVVDRQQVHRTISKEEMLHLFEFDDD 1278
>At5g19330.2 68418.m02304 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 636
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 395 FRAMFTGELAESRATEVTIRDVDEQAMEQLVEFCYT 502
FRAMF G E A ++ I ++ + E ++ F YT
Sbjct: 518 FRAMFDGGYREKDARDIEIPNIKWEVFELMMRFIYT 553
>At3g56230.1 68416.m06249 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
POZ protein (SP:O43791) [Homo sapiens]
Length = 282
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/57 (22%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 359 AHRVILSACSPYFRAMFTGELAESRAT-EVTIRDVDEQAMEQLVEFCYTAHSSSRRV 526
AHR +L++ S F+ + + ++ +T+++++ + ++ L+EF YT +S ++
Sbjct: 126 AHRALLASKSEIFKNILDSDGCKTAPEYAITLQELNSEQLQALLEFLYTGTLASDKL 182
>At1g04390.1 68414.m00429 expressed protein
Length = 849
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 359 AHRVILSACSPYFRAMFTGELAESRATEVTIRDVDEQAMEQLVEFCYT 502
+HRVILS+ Y RA+F + ES + + V + +LV + Y+
Sbjct: 683 SHRVILSSGCEYLRALFRSGMQESHLDRLNV-PVSWLGLTKLVSWFYS 729
>At4g00170.1 68417.m00018 vesicle-associated membrane family protein
/ VAMP family protein similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 239
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 235 PGDPPSPILLWPRALPSCKRSGGEAQPHTESIFDDFVPPHEQTSPKENEIFT 80
P +PPSP+ S S + + S+FDD E+TS K +E ++
Sbjct: 128 PANPPSPVPEGSEEGNSPMASLNDIASQSASLFDDVSRTFEETSEKSSEAWS 179
>At5g54880.1 68418.m06836 DTW domain-containing protein contains
Pfam domain, PF03942: DTW domain
Length = 394
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 479 QLVEFCYTAHSSSRRVTCRPCSRLRACCSCKRSRT-CAASSSSVTGLLQLPRHQSLRRH 652
Q V T ++R TC C + C CK+ R+ C + S+T +LQ H R+H
Sbjct: 31 QGVRVSKTLKMGTKRPTCPSCDKPSQLCLCKKMRSPCFDNQVSIT-ILQ---HSLERKH 85
>At3g59250.1 68416.m06605 F-box family protein contains F-box domain
Pfam:PF00646
Length = 425
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 148 PCGVGLRPRCVCSWVTHAATKGWVRADPQV 237
PCG G+ P V SW+ + +G + D QV
Sbjct: 60 PCGHGVIPDYVTSWILNVLERGVLDLDLQV 89
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 323 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELAESRATEVTIR-DVDEQAMEQLVEFCY 499
DV V AH+++L+A S FRA G L + + + + +L+E Y
Sbjct: 203 DVTFEVDGETFPAHKLVLAARSAVFRAQLFGPLRSENTNSLEVEAESCPSLLSELLE--Y 260
Query: 500 TAHSSSRRVT 529
A S +T
Sbjct: 261 VARLSEHSLT 270
>At1g23270.1 68414.m02911 hypothetical protein
Length = 180
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 401 AMFTGELAESRATEVTIRDVDEQAMEQLVEFCYTAHSSSRRVTCRPCSRLRACCSCKRSR 580
+ FTG+ +S E+ + D+ +EQ+ + + + + P +RLR S SR
Sbjct: 3 SFFTGK-DDSAVEELLSQAKDQYVLEQVAKINCSGFTDDTALPTNPETRLRRLKSLPVSR 61
Query: 581 TCAASSS 601
T + SSS
Sbjct: 62 TDSVSSS 68
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Frame = +1
Query: 151 CGVGLRPRCVCSWVTHAAT---KGWVRADPQVARGCPTLGE 264
CG CV SW H W ++ GC TLG+
Sbjct: 184 CGKKYHRNCVKSWAQHRDLFNWSSWACPSCRICEGCGTLGD 224
>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
protein similar to A. thaliana putative protein
F6I18.110, GenBank accession number 2980768
Length = 310
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 135 SKIDSVWGWASPPLRLQLGNARGHKRMGEGGSPG 236
S +D G +PP+ LQLG+ MG G G
Sbjct: 38 SGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGGSG 71
>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 509 SSSRRVTCRPCSRLRACCSCK 571
SS R+ C PC+ L +CCS K
Sbjct: 130 SSLLRLLCSPCALLCSCCSGK 150
>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 509 SSSRRVTCRPCSRLRACCSCK 571
SS R+ C PC+ L +CCS K
Sbjct: 130 SSLLRLLCSPCALLCSCCSGK 150
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,435
Number of Sequences: 28952
Number of extensions: 288410
Number of successful extensions: 1033
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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