Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0996
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 89 2e-18
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 1.4
04_04_0845 - 28646547-28646637,28646724-28646854,28647832-286479... 29 2.5
10_08_0950 + 21764902-21765912 28 4.3
02_05_0287 - 27525722-27525812,27525927-27526057,27526945-275270... 28 4.3
07_01_0738 + 5626062-5626862 27 5.7
05_03_0446 + 14111667-14111906,14112011-14112418 27 5.7
08_02_1595 - 28114751-28114858,28115018-28115283,28116609-281167... 27 7.5
08_01_0960 + 9611332-9611586 27 7.5
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 27 10.0
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 27 10.0
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 27 10.0
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 88.6 bits (210), Expect = 2e-18
Identities = 41/70 (58%), Positives = 54/70 (77%)
Frame = +3
Query: 45 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 224
+S +E+AC +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE +V DLI
Sbjct: 1 MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60
Query: 225 NIGSGVGAAP 254
++GSG GAAP
Sbjct: 61 SVGSGGGAAP 70
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 9 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 131
G+R+LA+ V+K + S +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289
>04_04_0845 -
28646547-28646637,28646724-28646854,28647832-28647938,
28648043-28648121,28648578-28648667,28648814-28649065,
28649367-28649519,28649631-28649955,28650069-28650283
Length = 480
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 171 PGLFAKALEGINVRDLITNIGSGVGAAPPLV 263
PG+F KAL+ + ++ G G+ PP V
Sbjct: 358 PGIFRKALQDVEIKGYTIPAGWGIMVCPPAV 388
>10_08_0950 + 21764902-21765912
Length = 336
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 268 HSTSGGAAPTPEPMLVIRSRTLMPSKALAN 179
H +GG AP P P +I+ ++ P+ A A+
Sbjct: 141 HDLAGGGAPDPSPNPIIKIKSKGPAAAAAS 170
>02_05_0287 -
27525722-27525812,27525927-27526057,27526945-27527022,
27527080-27527186,27527302-27527380,27528001-27528096,
27528192-27528443,27528691-27528840,27528953-27529277,
27529373-27529584
Length = 506
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 171 PGLFAKALEGINVRDLITNIGSGVGAAPPLV 263
PG+F KAL+ I + G GV PP V
Sbjct: 358 PGIFRKALQDIEFKGYTIPAGWGVMVCPPAV 388
>07_01_0738 + 5626062-5626862
Length = 266
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = -1
Query: 292 AGCSSSGWHS-TSGGAAPTPEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFS 116
A C G ++ T+ P+ L R RT++ K L Q T + A +
Sbjct: 83 AACLLRGSNTRTNFATQAAPDSPLASRIRTILTHKKLKKSMPQPTITFSTAVYHHARSTV 142
Query: 115 PVTATSSST 89
P ATS+ST
Sbjct: 143 PAAATSTST 151
>05_03_0446 + 14111667-14111906,14112011-14112418
Length = 215
Score = 27.5 bits (58), Expect = 5.7
Identities = 24/80 (30%), Positives = 33/80 (41%)
Frame = -1
Query: 250 AAPTPEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE* 71
AAP P+ R +L P+K+LA+ S+S AA TA S + R E
Sbjct: 99 AAPGPKRFTARRHVSLRPTKSLAHLSPARASSSAAAG------GGSATAPSGACRYDVEG 152
Query: 70 THANSAFDTIFSFERASCRR 11
++A D S RR
Sbjct: 153 SYAARCLDVFASASAGEQRR 172
>08_02_1595 -
28114751-28114858,28115018-28115283,28116609-28116703,
28117179-28118154,28118245-28118369,28118443-28118569,
28118606-28118843
Length = 644
Score = 27.1 bits (57), Expect = 7.5
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -1
Query: 289 GCSSSGWHSTSGGAA----PTPEPMLVIRSRTLMP-SKALANR 176
GCSSS S A PTP+P +S TL+P S A NR
Sbjct: 194 GCSSSSSPSAVTKEASPPPPTPQPQQQAQSATLLPSSSASTNR 236
>08_01_0960 + 9611332-9611586
Length = 84
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 283 SSSGWHSTSGGAAPTPEP 230
S GWH GG A P+P
Sbjct: 53 SDEGWHRRGGGPAANPDP 70
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -2
Query: 165 MALHLQPPLSRWWKFSHQLRQHHHQP 88
+ LH +P L W +F +QH P
Sbjct: 4466 LVLHFEPYLMNWSEFDQLQKQHEENP 4491
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 26.6 bits (56), Expect = 10.0
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = +3
Query: 18 QLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 197
Q A LK K +AC L+LV DD T T+ KA A D+ G +AL
Sbjct: 657 QAADHALKRQVKHSVACGVDWLVLVSDDSDFT----DTVRKARAADLRTVVVGDGCRALG 712
Query: 198 GI 203
+
Sbjct: 713 SV 714
>03_05_0725 + 27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -1
Query: 250 AAPTPEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRA 77
AAPTP P I A+A+ P + T+ AAA S +T +SSS M +
Sbjct: 1796 AAPTPAPAAAIAPSQQEAGVAVASSPHEAQKTAAAAA------ASQLTRSSSSRAMES 1847
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,116,150
Number of Sequences: 37544
Number of extensions: 212100
Number of successful extensions: 818
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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