Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0995
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632...    32   0.53 
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    29   4.9  
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034     28   8.6  

>07_03_1576 -
           27862043-27862129,27862935-27862988,27863042-27863243,
           27865015-27865249,27865338-27865404,27865489-27865639,
           27866898-27866957,27867402-27867466
          Length = 306

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +1

Query: 340 LDTCKHQLCSMCXXXXXXXXXXPCPLCR-----VESLHFNVYSINRNVVDV 477
           L TC H +C  C           CP CR     V S    +Y+ NR++VD+
Sbjct: 178 LPTCSHAMCIKCYRDWRSRSQS-CPFCRDSLKRVNSADLWIYTDNRDIVDI 227


>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 265 CFSVAEIKNYFMQPIDRLTIIPVLELDTCK 354
           CFS     N++M+PI+ LT++  +++DT +
Sbjct: 237 CFSTEGTANFYMRPIEGLTVL--VDMDTAE 264


>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
          Length = 930

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 486 QRDECRTMNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSEITSDTKKAADR 665
           ++D  R  +K+    DA       FEK  L+D ++ +    +    L E++ D + + DR
Sbjct: 26  RKDFIRVRSKVKPLIDALESVHACFEKLSLEDEKNLDALQEAWMMDLRELSYDMEDSLDR 85

Query: 666 HCRTNAAQ 689
               +AA+
Sbjct: 86  FLVKSAAE 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,294
Number of Sequences: 37544
Number of extensions: 298103
Number of successful extensions: 901
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)