Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0995
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45323| Best HMM Match : rve (HMM E-Value=5.3e-31)                   31   0.71 
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)              31   0.94 
SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)              31   1.2  
SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)                   29   2.9  
SB_28707| Best HMM Match : rve (HMM E-Value=0.011)                     28   6.6  
SB_21839| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_45323| Best HMM Match : rve (HMM E-Value=5.3e-31)
          Length = 577

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 465 RCGRD*MQRDECRTMNKINDNFDAAS-LASVLFEKSLLDDAEDSNNAANSDDTMLSEITS 641
           RCG D    D CR  + I   F     L  V F+K   + +  ++     + T   ++ S
Sbjct: 168 RCGSDKHLADACRHKDTICGYFSKPGHLVRVCFKKKRDEKSRQTHQITTEEPTREPDVVS 227

Query: 642 DTKKAAD 662
           D++ AAD
Sbjct: 228 DSELAAD 234


>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +2

Query: 56  RRTFRC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFSANRR 217
           RR   C FW     + K L      C+T    +Q  TL+   A A W+++ +VLFS N +
Sbjct: 524 RRARECIFWPGMPAEIKQLASVCDACQTFAKAQQKETLIAIEAKAPWEIVGVVLFSWNNK 583


>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
          Length = 337

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 349 CKHQLCSMCXXXXXXXXXXPCPLCRV 426
           C+H+ C MC           CP+CR+
Sbjct: 52  CEHEFCKMCFTQNVQEANLQCPMCRI 77


>SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 256 CNICFSVAEIK-NYFMQPIDRLTIIPVLELDTCKHQLC 366
           C   ++   +K   F QP  RL+ IPV+E   C H +C
Sbjct: 33  CQFVYASVLLKFTNFTQPCPRLSGIPVVEASVCHHIIC 70


>SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)
          Length = 320

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 537 ASLASVLFEKSLLDDAEDSNNAANSDDTMLSEITSDTKKA 656
           A  A ++   S+ DD+E++ N A++DDT+  ++ +D + +
Sbjct: 2   AQAAGLVQYDSITDDSEETENHASTDDTVKKKVHADERSS 41


>SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)
          Length = 637

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +2

Query: 56  RRTFRC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFSANRR 217
           RR   C FW     + K L      C+T    +Q +TL+   A A W+++ + LFS N +
Sbjct: 450 RRARECIFWPGMSAEIKQLASVCDACQTFAKAQQKKTLITIEAKAPWEIVGVDLFSWNNK 509


>SB_28707| Best HMM Match : rve (HMM E-Value=0.011)
          Length = 173

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +2

Query: 56  RRTFRC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFSANRR 217
           RR   C FW     + K L      C+T    +Q  TL+   A A W+++ + LFS N +
Sbjct: 30  RRARECIFWPGMSAEIKQLASVCDACQTFSKAQQKETLITKEAKAPWEIVGVDLFSWNNK 89


>SB_21839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 555 LFEKSLLDDAEDSNNAANSDDTMLSEITSDTKKAADR 665
           +FEK      + SN +A++D+T +S + S+  K  D+
Sbjct: 61  IFEKQSKTKGKPSNESADADNTGVSRLPSNVAKGKDQ 97


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 628 LKSQAILKKLQIDIAEQTQLNI 693
           LK  A+LKKL ID+  +T  NI
Sbjct: 383 LKKMAVLKKLPIDVLNRTLFNI 404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,034,449
Number of Sequences: 59808
Number of extensions: 364539
Number of successful extensions: 1038
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)