Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0995
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73860.1 68414.m08552 kinesin motor protein-related similar t...    33   0.25 
At4g12270.1 68417.m01944 copper amine oxidase family protein con...    30   1.8  
At3g02420.1 68416.m00229 expressed protein                             28   5.4  
At4g12290.1 68417.m01947 copper amine oxidase, putative similar ...    28   7.2  
At4g01090.1 68417.m00147 extra-large G-protein-related contains ...    28   7.2  
At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger) fa...    28   7.2  

>At1g73860.1 68414.m08552 kinesin motor protein-related similar to
            kinesin-C GB:AAF04841 from [Strongylocentrotus
            purpuratus]
          Length = 1030

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = +3

Query: 441  QRLQHKPKRCGRD*MQRDECRTMNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDT 620
            +RLQH+P+R  +  M+R      + IN +    S  S     S+ D    +++A    D 
Sbjct: 879  ERLQHQPQRLQKSMMRRKSIGHTDDINSDTGEYSSQS---RYSVTDGESLASSAEAEYDE 935

Query: 621  MLSEITSD 644
             LSEITSD
Sbjct: 936  RLSEITSD 943


>At4g12270.1 68417.m01944 copper amine oxidase family protein
           contains similarity to copper amine oxidase [Cicer
           arietinum] gi|3819099|emb|CAA08855; contains Pfam
           domains PF02728: Copper amine oxidase, N3 domain and
           PF02727: Copper amine oxidase, N2 domain
          Length = 460

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 265 CFSVAEIKNYFMQPIDRLTIIPVLELDT 348
           CFS  +  N++M+PI+ LT++   +LDT
Sbjct: 236 CFSTQDTPNFYMRPIEGLTLL--FDLDT 261


>At3g02420.1 68416.m00229 expressed protein
          Length = 348

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 530 KIIVYFIHCATLVTLHL-ITSTTFRFML*TLKCKLSTLHRGHGIFFRFLILRMHIEHN*C 354
           K  +YFI+C T VT HL +       +   L+     L R  G   R  I R ++E + C
Sbjct: 199 KDFIYFIYCLTFVTSHLCLKFALIPILCRALEQVAKFLRRNFG---RSTIYRKYLE-DPC 254

Query: 353 LHVSSSNT 330
           + V S+ T
Sbjct: 255 VWVESNTT 262


>At4g12290.1 68417.m01947 copper amine oxidase, putative similar to
           copper amine oxidase [Cicer arietinum]
           gi|3819099|emb|CAA08855
          Length = 566

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 265 CFSVAEIKNYFMQPIDRLTIIPVLELDT 348
           CF      N++M+PI+ LTI+  ++LDT
Sbjct: 58  CFMTQGTPNFYMRPIEGLTIL--IDLDT 83


>At4g01090.1 68417.m00147 extra-large G-protein-related contains
           weak similarity to extra-large G-protein [Arabidopsis
           thaliana] gi|3201682|gb|AAC19353
          Length = 714

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 471 GRD*MQRDECRTMNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSEI 635
           GRD  ++DE   + ++ ++ D  +  SV  E    DD E S+N++      +  +
Sbjct: 403 GRDIPRKDEEEPVQELRNHQDTITTQSVRSESQHSDDEERSSNSSEQQQKEVKSV 457


>At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           RHA2b [Arabidopsis thaliana] GI:3790571; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 211

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +1

Query: 337 ELDTCKHQLCSMCXXXXXXXXXXPCPLCR--VESLH 438
           E+ TC H     C           CPLCR  V+ LH
Sbjct: 175 EMPTCSHYFHEPCLTEWLTRDNNSCPLCRKPVDKLH 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,625,849
Number of Sequences: 28952
Number of extensions: 245991
Number of successful extensions: 609
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)