Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0994
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    29   0.85 
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   6.0  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   7.9  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
 Frame = +3

Query: 222 SHSRMAELPSASSLLTNTRSVTAAHC-----WRTRNAQ--ARQFTLAFGTANIFSGGTRV 380
           S ++ A  P+A+ L  NT + T++       + + NA   +   T +FG A      T  
Sbjct: 23  SAAQGAATPAATGLFGNTNNNTSSTAPSGGLFGSNNASNTSAPSTFSFGKAATTGNSTNA 82

Query: 381 TTSSVHLHGSYNMNN 425
           +TSS    GS N NN
Sbjct: 83  STSSPFSFGSTNTNN 97


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 279 SVTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSV-HLHGSYNMNNLNNDVAIINH 455
           S+ AA  +R+ N +      +    NI  G   +    + H    +  + +N  V+ IN+
Sbjct: 365 SLLAALDFRSSNEEQHPGLRSLDPLNIQDGDLTMHPMHIRHSQSDFYPSGINTPVSGINY 424

Query: 456 NHVGF--NNNIQRI 491
            ++GF  NN++Q +
Sbjct: 425 PNLGFSANNSVQSL 438


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 187 VGGRTTHNPGTVEVSGFLGASKTLSPGDTDL 95
           +G    H  G+V   GF G+    +P DT +
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADTSV 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,717
Number of Sequences: 5004
Number of extensions: 39217
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)