Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0994
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)                     39   0.005
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               30   2.1  
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)                     30   2.1  
SB_21739| Best HMM Match : VWA (HMM E-Value=6.4e-24)                   29   2.8  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)                     29   2.8  
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         29   3.6  
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              29   4.8  
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)                    29   4.8  
SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)             28   6.4  
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)           28   8.4  
SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 865

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = +3

Query: 255 SSLLTNTRSVTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNN 434
           +SLLT   ++TAAHC  T +  A  +TL  G     + G     S +  H  ++M ++ N
Sbjct: 268 ASLLTPGWALTAAHCL-TLSDDASDYTLVAGAHQRENDGQVFGISKIRKHKGFSMVHVRN 326

Query: 435 DVAIIN-HNHVGFNNNIQRINLAS 503
           DVA++    +V  ++ +  I L S
Sbjct: 327 DVALLKLSTYVQLSDKVGTICLPS 350


>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +3

Query: 258 SLLTNTRSVTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSVH---LHGSYNMNNL 428
           SL+++T  VTAAHC   R++   Q+ +  G  N         T +V     H  YN   L
Sbjct: 505 SLVSSTWVVTAAHCV-ARSSNPAQYQIIVGEHNRNVNEVTEETLNVKKVIAHPQYNNPRL 563

Query: 429 NNDVAII 449
           +ND+A+I
Sbjct: 564 SNDIALI 570


>SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 343

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 353 SCTKSEGELTSLGVP-GSPAVSRGHGAGVGQ*GTRRWKFC 237
           S  K+EG   S  V  G P+ SR  G G+   G R W  C
Sbjct: 3   SAGKTEGYCESNNVSDGDPSRSRDGGGGISHDGPRAWSVC 42


>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 420 NNLNNDVAIINHNHVG-FNNNIQRINL 497
           NN+NN+  IIN+N++   NNNI  IN+
Sbjct: 409 NNINNNNIIINNNNIIIINNNIININI 435



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 426 LNNDVAIINHNHVGFNNNIQRINL 497
           +NN+  IIN+N++  NNNI   N+
Sbjct: 393 INNNNIIINNNNIIINNNINNNNI 416


>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
          Length = 189

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 396 HLHGSYNMNNLNNDVAIINHNHVGFNNNIQRIN 494
           +++ + N NN NN++  IN+N+   NNNI   N
Sbjct: 92  NINNNNNNNNNNNNINNINNNNNNNNNNINNNN 124


>SB_21739| Best HMM Match : VWA (HMM E-Value=6.4e-24)
          Length = 220

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = -3

Query: 256 LADGSSAIRECDHKSSKMGVSTSVGGRTTHNPGT-VEVSGFLGASKT-LSPGDT-DLVVV 86
           L DGS +I   +    K  VST +GG      GT + V  +  ++KT LS GD  DL+ V
Sbjct: 6   LVDGSGSIGSSNFDRLKEFVSTVIGGFVISPQGTQISVVVYHSSAKTHLSFGDAQDLISV 65

Query: 85  VKFDGLFCHDHGRQRH 38
            +      +  G Q +
Sbjct: 66  RRIISSIAYPSGPQTY 81


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 375  RVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 479
            R   +S++   + N N++NN+ + IN+N+   NNN
Sbjct: 1759 RNNNNSINNRNNTNNNSINNNNSSINNNNSSINNN 1793


>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 800

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 258 SLLTNTRSVTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSY-NMNNLNN 434
           SLL++T  +TAAHC   R+     +T+  G       GT    S+ + H  Y    +  +
Sbjct: 343 SLLSSTWVLTAAHC-VIRSHNTSDYTVIVGAHKRVLDGTEHKLSAFYKHEKYVGGKDKKH 401

Query: 435 DVAII 449
           D+A+I
Sbjct: 402 DLALI 406


>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 73  GLFCHDHGRQRHQYCCEDLHGYY 5
           G FCH H   R   CC+DL   Y
Sbjct: 601 GSFCHIHPTDRFAVCCKDLLSSY 623


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
 Frame = +3

Query: 258  SLLTNTRSVTAAHCWRTRNAQARQFTL-AFGTANIFSG--------GT--RVTTSSVHLH 404
            S++ +   VTAAHC  T+   A ++T+ AF   N+  G        G+   +    + +H
Sbjct: 1812 SIVNSQWIVTAAHCVTTKPPGASRYTMYAFSDLNVTLGEHQLYQLDGSEQNIPIEGIVVH 1871

Query: 405  GSYNMNNLNNDVAIIN-HNHVGFNNNIQRINL 497
             SY  N+L+ D+A++     + FN  + ++ L
Sbjct: 1872 PSY--NDLDYDIALLKLRQPITFNAYVSQVCL 1901


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 359 DVSCTKSEGELTSLGVPGSPAVSR 288
           +VS T S G  TS G PG P +SR
Sbjct: 224 EVSSTSSPGADTSTGHPGDPVISR 247


>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
          Length = 320

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -3

Query: 268 VSKELADGS---SAIRECDHKSSKMGVSTSVGGRTTHNPGTVEVSGF 137
           VS +   GS   +A R+CD  +S      S    TTH  G  +++GF
Sbjct: 255 VSVQALSGSPTEAANRDCDDSASSTSDKESAPDETTHASGNTKLTGF 301


>SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)
          Length = 213

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 408 SYNMNNLNNDVAIINHNHVGFNNN 479
           S N NN+NN++ I N+N+   NNN
Sbjct: 126 SDNNNNINNNIIINNNNNNDENNN 149


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 193  CSPPSCWTCDRTHEWQNFHLRV 258
            C+ P CW   +TH   N H RV
Sbjct: 980  CNEPECWKTFKTHTNLNLHSRV 1001


>SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 351  ANIFSGGTRVTTSSVHLHGSYNMN-NLNNDVAIINHNHVGFNNNIQRINL 497
            A I++GGT    + +  H   N N N NN+    N N+   NN I   ++
Sbjct: 978  AYIYAGGTATPDTGISEHNDNNNNTNTNNNSDNNNTNNNSDNNTINNYSV 1027


>SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)
          Length = 273

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 414 NMNNLNNDVAIINHNHVGFNNN 479
           N NN+NN+  I N+N++  NNN
Sbjct: 238 NNNNINNNNNINNNNNINNNNN 259


>SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 396 HLHGSYNMNNLNNDVAIINHNHVGFNNNIQR 488
           H +G    NN NN+  IIN+N+    NNI++
Sbjct: 24  HNNGHNITNNNNNNNIIINNNNDNSKNNIKK 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,001,254
Number of Sequences: 59808
Number of extensions: 375287
Number of successful extensions: 2421
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2184
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)