Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0994
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023842-4|CAA19517.2| 229|Caenorhabditis elegans Hypothetical ... 31 0.60
CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical ... 29 2.4
AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical... 29 2.4
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 29 4.3
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 28 5.6
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 28 7.4
>AL023842-4|CAA19517.2| 229|Caenorhabditis elegans Hypothetical
protein Y44A6D.3 protein.
Length = 229
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 363 SGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQ 485
+ R+ S H G +NN+NN+ NHNH NNNIQ
Sbjct: 68 AAAARLNAQSSHSSGPARLNNMNNN-NNNNHNH-SKNNNIQ 106
>CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical
protein C52D10.13 protein.
Length = 281
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 383 GDPGAAGEDVSCTKSEGELTSLGVPGSPAVSRGHGAGVGQ*G 258
G PG AG ++GE LG PG+P V R + VG+ G
Sbjct: 173 GAPGPAGP----VGADGEPGELGAPGAPGVQRTVASPVGEPG 210
>AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical
protein Y57A10A.11 protein.
Length = 458
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -2
Query: 386 GGDPGAAGEDVSCTKSEGELTSLGVPGSPAVSRGHGAG 273
GGD GA GE ++GE GVPG+P HG G
Sbjct: 401 GGDQGAPGEP----GADGEPGMDGVPGNPGRDGTHGHG 434
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 221 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 102
SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 221 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 102
SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 383 GDPGAAGEDVSCTKSE-GELTSLGVPGSPAVSRGHGAG 273
G PG G +V C G + S+G+PG P G+ G
Sbjct: 199 GIPGVPGANVICPPGPAGSMGSVGLPGPPGNDLGNSNG 236
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 282 VTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAII 449
VTAAHC Q R F N + + ++H YN +ND+A++
Sbjct: 77 VTAAHC--ALQLQTRSFVYVREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALL 128
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 386 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 300
GG PG AG+ S G+ G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 386 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 300
GG PG AG+ S G+ G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Frame = -2
Query: 383 GDPGAAGED-------VSCTKSEGELTSLGVPGSPAVSRGHGAGVG 267
G PGAAG D T + GE G PG P + GAG G
Sbjct: 186 GKPGAAGSDGEAGAPGTKTTNAPGEPGPAGPPGPPGPNGEAGAGSG 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,543,290
Number of Sequences: 27780
Number of extensions: 253541
Number of successful extensions: 972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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