Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0994
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30180.1 68417.m04291 expressed protein 30 1.3
At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 29 2.3
At4g01985.1 68417.m00265 expressed protein 28 6.9
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ... 28 6.9
At5g67370.1 68418.m08495 expressed protein similar to unknown pr... 27 9.1
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ... 27 9.1
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 27 9.1
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 27 9.1
At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family pr... 27 9.1
>At4g30180.1 68417.m04291 expressed protein
Length = 158
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 21 SSQQY*WRWRPWSWQKRPSNLTTTTRSVSPGLRVLDAPRK 140
S+Q++ W SN TTTT S S G+R+L+ P K
Sbjct: 62 SAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDK 101
>At4g13800.1 68417.m02139 permease-related contains 9 predicted
transmembrane domains; contains Pfam PF05653: Protein of
unknown function (DUF803); identified as COG0697,
Permeases of the drug/metabolite transporter (DMT)
superfamily
Length = 336
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 220 HKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKT 119
HK+ MG STS+ G T+H+P V G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -2
Query: 389 GGGDPGAAGEDVSCTKSEGELTSLGVPGSPAVSRGHGAGVG 267
GGG G+ G S G +GV G + G G GVG
Sbjct: 461 GGGGRGSGGAGGGTGGSVGAGGGVGVGGGGGIGGGAGGGVG 501
>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
(ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
from [Arabidopsis thaliana]; contains Pfam profiles
PF01344: Kelch motif, PF00785: PAC motif and PF00646:
F-box domain; contains TIGRfam profile TIGR00229: PAS
domain S-boxidentical to cDNA Adagio 3 (ADO3)
GI:13487071
Length = 619
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 300 WRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLN 431
WR N + LA+G + GGTRV H + +N L+
Sbjct: 564 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNELH 607
>At5g67370.1 68418.m08495 expressed protein similar to unknown
protein (gb|AAC18972.1)
Length = 327
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 157 YQDCGWFCRQRWCSPPSCWTCDR 225
Y++ GW+ Q W PP DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207
>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 815
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 234 MAELPSASSLLTNTRSVTAAHC 299
++ELP A+ L+N RS+ +HC
Sbjct: 716 LSELPEATERLSNLRSLDISHC 737
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 72 PSNLTTTTRSVSPGLRVLDAPRKPL 146
PS+ TTTTR+ SP + ++ PL
Sbjct: 27 PSSSTTTTRATSPSSTISESSNSPL 51
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 72 PSNLTTTTRSVSPGLRVLDAPRKPL 146
PS+ TTTTR+ SP + ++ PL
Sbjct: 27 PSSSTTTTRATSPSSTISESSNSPL 51
>At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 253
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -3
Query: 235 IRECDHKSSKMGVSTSVGGRTTH-NPGTVEVSGFLGASKTLSPGDTDLVVVVKFDGLFCH 59
+ C+ K+ K + V R T+E S + +TL P +TD + V+ F
Sbjct: 92 VLSCNSKTDKATLLAKVVQRVRELKQQTLETSD---SDQTLLPSETDEISVLHFGDYSND 148
Query: 58 DHGRQRHQYCCED 20
H + CCED
Sbjct: 149 GHIIFKASLCCED 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,039,882
Number of Sequences: 28952
Number of extensions: 237822
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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