Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0993
         (584 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   2.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.4  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   5.8  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 110 WSITSTTLTNFPFKGPSATRATRPGCYVPCK 18
           W IT +   +FPF   S    T+ G Y P K
Sbjct: 244 WHITDSH--SFPFTAESLPDLTKYGAYSPKK 272


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 514 KQYFLAGFLVAFLVRTFFAAALGIFF 437
           + YF+  F+       FF  AL IF+
Sbjct: 51  RTYFIYAFVAPVKCLAFFCTALVIFY 76


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 514 KQYFLAGFLVAFLVRTFFAAALGIFF 437
           + YF+  F+       FF  AL IF+
Sbjct: 284 RTYFIYAFVAPVKCLAFFCTALVIFY 309


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 514 KQYFLAGFLVAFLVRTFFAAALGIFF 437
           + YF+  F+       FF  AL IF+
Sbjct: 284 RTYFIYAFVAPVKCLAFFCTALVIFY 309


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 168 KPTPSHKIPPQIRVHSP 218
           +P P H  PP  ++H P
Sbjct: 29  QPLPRHFNPPSDKLHHP 45


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,763
Number of Sequences: 336
Number of extensions: 2764
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)