Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0993
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 59 5e-10
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 29 0.50
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 28 1.2
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 27 1.5
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 27 2.7
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 26 4.7
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 25 6.2
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 25 8.1
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 8.1
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 8.1
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 8.1
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 58.8 bits (136), Expect = 5e-10
Identities = 30/68 (44%), Positives = 38/68 (55%)
Frame = +1
Query: 40 GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRXNQLHLTKFRLKYAFTAP 219
GRV LV G GKL +VD++D RAL+D P S PRQ IR + LT +K A
Sbjct: 11 GRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGAR 70
Query: 220 TRLVRKAW 243
+ +V K W
Sbjct: 71 SGIVAKKW 78
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 264 KWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNRARTAVFKSLK 404
KW S WA+KL K+ R+Q+ D+DRF + + +R + AV K+LK
Sbjct: 86 KWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 29.1 bits (62), Expect = 0.50
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 34 QPGRVALVADGPLKGKLVSVVDVIDQ 111
+PG+VAL+ G GK V ++ IDQ
Sbjct: 6 KPGKVALITRGRFAGKKVVILQAIDQ 31
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 34 QPGRVALVADGPLKGKLVSVVDVIDQ 111
+PG+VALV G GK V ++ +DQ
Sbjct: 6 KPGKVALVTRGRFAGKKVVILQNVDQ 31
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 470 HFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPIVIC 324
HF F+ + G + S H LE+GS LN S I IC
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRIC 490
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -2
Query: 508 YFLAGFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTR 356
YF++ ++ + + +F + G+ F F + TA+L+ FL+ R
Sbjct: 362 YFMSYYIFSNFLTSFLQVSYGLSIDMSSLTLNVFVFSMTTTAILSGFLMKR 412
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 37 PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 162
PG V ++ G +GK V V+ ++ T +V GP +GVP +++
Sbjct: 54 PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 53 RATRPGCYVPCKRHDVL 3
R T+PG YV CK D+L
Sbjct: 139 RVTKPGGYVCCKEADLL 155
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 207 VHSPYSSCEESVDRC*LNEKWTESQWA 287
VH PY+S E++ +N+K E W+
Sbjct: 135 VHHPYTSLEQAFHDGIINQKQLEFAWS 161
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 261 EKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARA 422
E+ E++ +KLA +EKR + + K R+++ RA+ A K + ++A A
Sbjct: 717 EQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQMSRESAHA 768
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 202 YAFTAPTRLVRKAWTDANSMKNGQKVNG 285
Y F P R +W A S+ +G+ VNG
Sbjct: 602 YLFGTPVIFKRTSWLKAASVVSGRFVNG 629
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 122 WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLL 223
++ D AV Y N+ NS++ ++A N S PL+
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLI 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,977
Number of Sequences: 5004
Number of extensions: 42778
Number of successful extensions: 100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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