Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0993
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979... 48 4e-06
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254... 48 6e-06
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136... 31 0.89
03_05_0161 + 21400580-21401695 30 1.6
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159... 29 3.6
07_03_0020 + 12512841-12512879,12512964-12513009,12513830-125139... 28 4.8
04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577 28 4.8
04_04_0387 + 24869594-24871480 27 8.3
>02_04_0659 -
24797477-24797533,24797614-24797726,24797814-24797943,
24798727-24798828,24798951-24798953
Length = 134
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +3
Query: 234 ESVDRC*LNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 413
++++ + KW S W +KL +++RA + D+DRFK+ A++KR A LK A
Sbjct: 73 KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTA 132
Query: 414 A 416
A
Sbjct: 133 A 133
Score = 48.0 bits (109), Expect = 6e-06
Identities = 32/76 (42%), Positives = 43/76 (56%)
Frame = +1
Query: 40 GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRXNQLHLTKFRLKYAFTAP 219
GRVALV G G+LV +VDV+DQ RALVD P + R QI +L LT ++
Sbjct: 10 GRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIKIDIKRVPK 67
Query: 220 TRLVRKAWTDANSMKN 267
+ KA +A+ +KN
Sbjct: 68 KTTLIKAMEEAD-VKN 82
>04_04_0506 -
25723809-25724299,25725082-25725237,25725316-25725445,
25726484-25726585,25726630-25726671
Length = 306
Score = 48.0 bits (109), Expect = 6e-06
Identities = 32/76 (42%), Positives = 43/76 (56%)
Frame = +1
Query: 40 GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRXNQLHLTKFRLKYAFTAP 219
GRVALV G G+LV +VDV+DQ RALVD P + R QI +L LT ++
Sbjct: 23 GRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIKIDIKRVPK 80
Query: 220 TRLVRKAWTDANSMKN 267
+ KA +A+ +KN
Sbjct: 81 KTTLIKAMEEAD-VKN 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +3
Query: 234 ESVDRC*LNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 365
++++ + KW S W +KL +++RA + D+DRFK+ A++K
Sbjct: 86 KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129
>04_03_0611 -
18011469-18012563,18012756-18012920,18013542-18013639,
18014541-18015498
Length = 771
Score = 30.7 bits (66), Expect = 0.89
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -2
Query: 496 GFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 317
G +VA+L R F A + A FK+L + R L +NL S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379
>03_05_0161 + 21400580-21401695
Length = 371
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 176 SWFXRICCLGTPLPGPSTSARVWSITSTTLTN 81
SWF C G P P P +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339
>01_05_0808 -
25414486-25414677,25415114-25415290,25415839-25415928,
25416016-25416081,25416170-25416240,25416375-25416450,
25416567-25420098,25421464-25421834
Length = 1524
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 133 PGSGVPRQQIRXNQLHLTKFRLKYAFTAPTRLVRKAWTDANSMKNGQKVNGPRS*RTKRS 312
P P ++ N LH +++ AP++L+ K + AN K + P S K +
Sbjct: 289 PSPDYPFLRVSNNSLHTQPIKVQPPLLAPSKLLNKKESKANGEKGSTGLTFPSSSSVKSA 348
Query: 313 A 315
+
Sbjct: 349 S 349
>07_03_0020 +
12512841-12512879,12512964-12513009,12513830-12513954,
12514289-12514319,12514427-12514497,12514644-12514692,
12514780-12514880,12515594-12515722,12516076-12516120
Length = 211
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/65 (35%), Positives = 28/65 (43%)
Frame = +3
Query: 228 CEESVDRC*LNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKV 407
CE+ VD C N K K KE + + F T R++A FKSLKV
Sbjct: 50 CEQDVDPC--NWKGVRCDSHTKRRGKEDTCRSAGINYF--TEDIAARSQAVARQFKSLKV 105
Query: 408 KAARA 422
KA A
Sbjct: 106 KAVVA 110
>04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577
Length = 464
Score = 28.3 bits (60), Expect = 4.8
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +3
Query: 12 MPFARYVATRACRPGSRRSLKGKVSERGRRY*PNSCTG*WTRQWST*ATD---PXKPTPS 182
+PF+R A A P RR L+ V+E R N G WS A D P P
Sbjct: 29 LPFSRQQA--ASGPDRRRLLRVYVAELPRAL--NH--GLLDLYWSLPAADSRIPASSDPD 82
Query: 183 HKIPPQIRVHSPY 221
H P R HSPY
Sbjct: 83 HPPPRPPRAHSPY 95
>04_04_0387 + 24869594-24871480
Length = 628
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 258 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 437
+EK+ + QW Q + + +K ++ + + A+ + NR R K ++++ ARA T
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556
Query: 438 K 440
K
Sbjct: 557 K 557
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,918,586
Number of Sequences: 37544
Number of extensions: 303293
Number of successful extensions: 845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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