Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0993
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 32 0.26
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 31 0.46
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 31 0.46
U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical p... 29 2.4
U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical p... 29 2.4
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu... 28 4.2
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 28 5.6
U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical pr... 27 7.4
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/81 (41%), Positives = 44/81 (54%)
Frame = +1
Query: 34 QPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRXNQLHLTKFRLKYAFT 213
Q GRV +A G +GKL ++V+VID R +DGP S V R L LTKF LK
Sbjct: 8 QIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKFVLKLRVG 67
Query: 214 APTRLVRKAWTDANSMKNGQK 276
T+ V+ A+ A +N QK
Sbjct: 68 QRTKGVKAAFDAAKVTENFQK 88
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/69 (31%), Positives = 39/69 (56%)
Frame = +3
Query: 198 QIRVHSPYSSCEESVDRC*LNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRA 377
++RV + + D + E + ++QWA+K+A + RA++TD++R+KL A+ RNR
Sbjct: 63 KLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRNRI 122
Query: 378 RTAVFKSLK 404
LK
Sbjct: 123 VRVELAKLK 131
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 273 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 419
E+QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 261 EKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARA 422
EK + AQK A EK+A+ T + K TA +VK+ ++ + K K A++
Sbjct: 131 EKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKS 184
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 261 EKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARA 422
EK + AQK A EK+A+ T + K TA +VK+ ++ + K K A++
Sbjct: 131 EKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKS 184
>U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical
protein K02F3.12b protein.
Length = 608
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 567 LYSLLKICLSHITCRRHKNNTS*LVFWSPSWC 472
LY++++ TCRR K W PSWC
Sbjct: 435 LYNMVRYAADSSTCRRVKLAEHFEEAWEPSWC 466
>U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical
protein K02F3.12a protein.
Length = 631
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 567 LYSLLKICLSHITCRRHKNNTS*LVFWSPSWC 472
LY++++ TCRR K W PSWC
Sbjct: 458 LYNMVRYAADSSTCRRVKLAEHFEEAWEPSWC 489
>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
protein 1 protein.
Length = 1010
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -1
Query: 449 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 336
RDI LA TS RS HL + + +PGT L S + L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 258 NEKWTESQWAQKLANKEKRAQMTDYDRFK 344
N KW A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
>U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical
protein C54D2.1 protein.
Length = 373
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 130 HQPVHEFGQ*RL--PRSLTFPLRDRRLPGRHALVATYRA 20
H+P+H Q + PR + + R GRHA ATY A
Sbjct: 215 HRPLHPRPQLQQLPPRYFVYAMEIRTAAGRHASAATYLA 253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,606,728
Number of Sequences: 27780
Number of extensions: 256820
Number of successful extensions: 733
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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