Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0993
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)            48   5e-06
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo...    47   8e-06
At5g15890.1 68418.m01859 expressed protein                             29   3.0  
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila...    27   7.0  

>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
          Length = 134

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 17/45 (37%), Positives = 32/45 (71%)
 Frame = +3

Query: 234 ESVDRC*LNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 368
           E++++  +  KW +S W +KL  +++RA + D+DRFK+  A++KR
Sbjct: 73  EAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = +1

Query: 40  GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRXNQLHLT 186
           GRVALV  G   GKLV +VDV+DQ RALVD P   + R Q+   +L LT
Sbjct: 10  GRVALVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLT 56


>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
           ribosomal protein L14 - Human,PIR3:JC5954
          Length = 134

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 16/45 (35%), Positives = 32/45 (71%)
 Frame = +3

Query: 234 ESVDRC*LNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 368
           E++++  +  KW +S W +KL  +++RA + D+DRFK+  A++K+
Sbjct: 73  EAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = +1

Query: 40  GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRXNQLHLT 186
           GRVALV  G   GKLV +VDV+DQ RALVD P   + R Q+   +L LT
Sbjct: 10  GRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLT 56


>At5g15890.1 68418.m01859 expressed protein
          Length = 526

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 137 PGPSTSARVWSITSTTLTNFPFKGPSATRATRP 39
           P P T  +VW+ TS   T      P   +AT+P
Sbjct: 286 PSPDTDFKVWNYTSYNFTLHVMWSPFLVKATKP 318


>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 841

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 82  LVSVVDVIDQTRALVDGPGSGVPRQQIRXNQLHLTKFRLKYAFTAPTRLVRKAWTDANS 258
           L ++ DV  + R   D  GS   R   + N +  T+FRL      P+R V    +D++S
Sbjct: 658 LSNLQDVKIENRDAEDSAGSSTSRASCKVNPICETRFRLPTHNQEPSRQVALDDSDSSS 716


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,756,176
Number of Sequences: 28952
Number of extensions: 231835
Number of successful extensions: 630
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)