Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0992
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.72 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.3  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   8.9  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 241 YPLLPSYQARSPSSLWASRDQYSDSS 164
           Y L P+Y+ R    LW   +Q SD +
Sbjct: 405 YKLPPNYEIRHKFKLWNFNNQISDDN 430


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 183  TSTPTPARGPALRASAGSASTPRHPGGNR 97
            T   +P R  A  AS+  + TPR   G+R
Sbjct: 925  THAGSPCRNSASPASSDRSGTPRSTNGDR 953


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 181 QYSDSSSGAGVEGVCRERLDPTSSRW*PSLSNPYRRPQ 68
           QYS S    G     R +  P + R   +  NPY RP+
Sbjct: 202 QYSQSR---GRHNQSRSKRQPKTGREDQTRRNPYYRPR 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,711
Number of Sequences: 336
Number of extensions: 2472
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)