Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0992
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    38   0.001
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    29   0.45 
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    26   4.2  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    26   4.2  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.3  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    25   9.6  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   9.6  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 23/75 (30%), Positives = 36/75 (48%)
 Frame = +2

Query: 257 MFLGDGMSVATLTAARTLLGQRRGQTGEESRLSFEHFPTVGLSKTYCLDAQVADSACSAS 436
           M + DGM   +L+  R+ +     + G    L  EH   +G S+T    + + DSA  A+
Sbjct: 64  MMVSDGMGPGSLSMTRSFVETLNDKEGYRLPLD-EHL--IGSSRTRSSSSLITDSAAGAT 120

Query: 437 AYLCGAKANLGTIGV 481
           A+ C  K   G +GV
Sbjct: 121 AFSCANKTYNGAVGV 135



 Score = 31.9 bits (69), Expect = 0.084
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +1

Query: 541 SIASWALDADRDAGIVTTTRVTHASPAGAYAHTADR 648
           +I   A +A    GIV T+RVT A+PA   AH A+R
Sbjct: 144 TILEAAKEAGYLTGIVVTSRVTDATPASFSAHAANR 179


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 19/51 (37%), Positives = 21/51 (41%)
 Frame = +3

Query: 195 QSELGERAWYDGSSGYARNVSCSSETACPWPHSRPPARCSASAGDRLERSP 347
           + E G R W DG S  A  VS S  T       R P     S    L+RSP
Sbjct: 51  EREAGMRRWTDGKSWSASRVSGSFLTYREMEGKRKPYHHGLSTDGSLKRSP 101


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 126 RRSLQTPSTPAPELESEYWSRDAQSELGERAWYDGSSGYARNV 254
           ++ L++P  P PE +  +   +A+S +GE    DG   +  N+
Sbjct: 184 KKKLESPEIPLPEQKKVHLGYEAKSNVGE----DGYKAFVSNL 222


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 620 AGEACVTRVVVTIPASLSASRAQEAMEASWCAASVAADSGV 498
           +G AC+T+ V+      + + AQ A  AS     V AD G+
Sbjct: 333 SGSACITQEVMACGRPQATAIAQVAEFASQFGIGVIADGGI 373


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 210 PPAHSGRRATSTPTPARGPALRASAGSASTPRHPG-GNRPY 91
           PP++S   A +TP  +   A  A A +AS  R  G   +PY
Sbjct: 63  PPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPY 103


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 159 PELESEYWSRDAQSELGERAWYDG 230
           P L  E W RDA++ + E  W+ G
Sbjct: 262 PNLRDEQWLRDAETAVVEE-WFGG 284


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 210 PPAHSGRRATSTPTPARGPALRASAGSASTPRHPGGNRPYL 88
           P   + +   S+P P+R P  R+S+   ++ + P  +R  L
Sbjct: 137 PQLQNLKHQLSSPQPSRAPIDRSSSNPVTSSQQPPNDRSTL 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,412
Number of Sequences: 5004
Number of extensions: 40819
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)