Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0992
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0275 + 17185335-17185895,17186460-17186516,17187360-171884... 36 0.028
02_03_0005 + 13865016-13865025,13865247-13865374,13865467-138659... 31 0.61
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420... 31 0.81
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 30 1.4
09_04_0629 - 19098087-19098516,19099120-19099370 30 1.9
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 30 1.9
02_05_0686 - 30900748-30902167,30903442-30904742 29 3.3
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 29 4.3
06_01_0576 - 4073261-4073821,4073891-4074145 28 5.7
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 28 5.7
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 28 5.7
01_06_1192 - 35302863-35303984,35305596-35306024 28 5.7
01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112... 28 5.7
08_02_1136 - 24614236-24615207 28 7.5
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 28 7.5
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 28 7.5
06_02_0216 + 13157377-13157583,13159271-13159339,13160727-131608... 28 7.5
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 7.5
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344... 27 9.9
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 27 9.9
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 27 9.9
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 27 9.9
>02_03_0275 +
17185335-17185895,17186460-17186516,17187360-17188454,
17188527-17188607
Length = 597
Score = 35.9 bits (79), Expect = 0.028
Identities = 26/70 (37%), Positives = 31/70 (44%)
Frame = +3
Query: 135 LQTPSTPAPELESEYWSRDAQSELGERAWYDGSSGYARNVSCSSETACPWPHSRPPARCS 314
L+TPS+P P W+ D G A D G ARN TA P + PAR +
Sbjct: 57 LRTPSSPPPLQFPPAWAADVAGTSGSAAPED--DGPARNAGADEATAGSAPKNEDPAR-A 113
Query: 315 ASAGDRLERS 344
A A D RS
Sbjct: 114 AGADDGPTRS 123
>02_03_0005 +
13865016-13865025,13865247-13865374,13865467-13865994,
13866111-13866287
Length = 280
Score = 31.5 bits (68), Expect = 0.61
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 111 DDVGSRRSLQTPSTPAPELESEYWSRDAQSELGERAWY-DGSSGYARNVSCSSETACPWP 287
DDV + L+TP + AP L+SE ++D+ S+L ++ + + G + SS + C
Sbjct: 198 DDVATDLELKTPGSSAP-LQSEIANKDSSSDLKKKQQFIQETKGSSLTEGSSSSSRC--S 254
Query: 288 HSRPP 302
S PP
Sbjct: 255 SSGPP 259
>11_06_0025 -
19341127-19341339,19341426-19341620,19341912-19342088,
19342505-19342672,19343533-19343574,19344129-19344214,
19345218-19345545
Length = 402
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 177 YWSRDAQSELGERAWYDGSSGYARNVSCSSETACPWPHSRPPARCSASA 323
++ RD +++ A + +S + + + TA PWP S PP R ++A
Sbjct: 34 FFLRDEETDTERMARIEAASDTSSAAAPVAPTAAPWPPSPPPPRTPSAA 82
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 189 RATSTPTPARGPALRASAG-SASTPRHPGGNR 97
R+ STP P RG A + G S S+PR GG R
Sbjct: 495 RSLSTPPPVRGAASMRNRGISFSSPRGTGGRR 526
>09_04_0629 - 19098087-19098516,19099120-19099370
Length = 226
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 207 PAHSGRRATSTPTPARGPALRASAGSASTPRHPGG 103
PA SGR TS T + A+R A PR GG
Sbjct: 62 PASSGRSPTSPSTSSSSTAMRFRKAEAELPRATGG 96
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/70 (22%), Positives = 33/70 (47%)
Frame = -2
Query: 214 RSPSSLWASRDQYSDSSSGAGVEGVCRERLDPTSSRW*PSLSNPYRRPQEPAASSERSVN 35
+SP SL++ + S SS V +++DP P+ NP+ E A+ + V
Sbjct: 144 KSPMSLFSRHSRRSSSSEDGSVRSGSSKKVDPKC----PNAGNPFHECTEHCAAKMKEVG 199
Query: 34 KRTMSAESNT 5
++ + + ++
Sbjct: 200 QQNKTVKKSS 209
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 180 STPTPARGPALRASAGSASTPRHPGGNRP 94
S+P+PA PA R ++ S S P PG P
Sbjct: 269 SSPSPAPAPAARPASPSPSLPLPPGRESP 297
>02_05_0235 - 27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 28.7 bits (61), Expect = 4.3
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 16/139 (11%)
Frame = -3
Query: 462 LAFAPHR*AEAEQAESATWASRQ*VLESPTVGKCSKDNRDSSPVCPRRWPSSVRAAVSVA 283
L+ +P A+ +S SR+ VL+S S +R +CP + PSS AV
Sbjct: 744 LSTSPRGTVVADSYQSNLQNSRKVVLDSAPNSVMSSPSRSPRILCPDQIPSSAFWAVKPH 803
Query: 282 TDMP-----------SPRNMXXXXXXXXXXXXXXAPPAHSGRRATSTPTP---ARGPALR 145
TD+ S + P+ + P+P + GP+ R
Sbjct: 804 TDVTFVGSAQCSSPGSGQTSGHNSVGGDMLAQLFWQPSRGSPECSPIPSPRMTSPGPSSR 863
Query: 144 ASAGSASTPRHP--GGNRP 94
+GS S P HP GG P
Sbjct: 864 VHSGSVS-PLHPRAGGMAP 881
>06_01_0576 - 4073261-4073821,4073891-4074145
Length = 271
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3
Query: 186 ATSTPTPARGPALRASAGSASTPRHPGGNRP 94
++S+P+PA PA +S+ +ASTPR P P
Sbjct: 6 SSSSPSPALAPA--SSSSTASTPRAPRQQLP 34
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +3
Query: 222 YDGSSGYARNVSCSSETACPWPHSRPPARCSASAGDRLERSPDC 353
+D +S R + C P S PPA SASA R P C
Sbjct: 24 FDAASAAPRVLPCGHSLCGPCIASLPPASASASASAASLRCPLC 67
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = +1
Query: 451 CKG*FGHHRCVGTRGATPL----SAATDAAHQLASIASWALDADRDAGIVTTTRVTHASP 618
C+G G C T +PL + A AA + +S W +A DA + R A+
Sbjct: 601 CEGIEGERECEQTADLSPLMEETATAAAAAEKASSYRYWVREATGDAAPLPVPRKLDATA 660
Query: 619 AGA 627
A A
Sbjct: 661 AAA 663
>01_06_1192 - 35302863-35303984,35305596-35306024
Length = 516
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 368 PTVGLSKTYCLDAQVADSACSASAYLCGAKANLG 469
PT ++ C D+ + D +C+A+ Y+ A A+ G
Sbjct: 360 PTANVTMRQCADSCLRDCSCAAALYVLAAVADHG 393
>01_01_0120 +
1119319-1119447,1120565-1120632,1121682-1121928,
1122430-1122498,1122782-1122907,1123326-1123406,
1123484-1123561,1124084-1124319,1124399-1124545,
1124864-1125152,1125231-1125352,1125713-1125749
Length = 542
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 207 PAHSGRRATSTPTPARGPALRASAGSASTPRHPGGNRP 94
P S A + P P PA +A +AS P P G P
Sbjct: 3 PRESSTVAAAAPFPQLDPAGGEAAAAASPPPDPAGGEP 40
>08_02_1136 - 24614236-24615207
Length = 323
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -1
Query: 587 TIPASLSASRAQEAMEASWCAASVAADSGV 498
T AS +ASRA++A + S AA+VAA+ V
Sbjct: 54 TSSASAAASRAKDAADQSTTAAAVAAEEFV 83
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 60 AGSCGRRYGLDKDGYHRDDVGSRRSLQTPSTPAPELESEYWSRDAQSEL 206
AG +G+DK+G D+ ++ A + E E W D++ EL
Sbjct: 69 AGEHASIFGIDKNGDDSDEPCAKDDANQSDMAALKEEEENWELDSEPEL 117
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -3
Query: 210 PPAHSGRRATSTPTPARGPALRASAGSASTPR-HPGGNRPYLIHIDG 73
PP S T P + P A + P HPG RP + ++G
Sbjct: 584 PPRPSSGDFTFRPLVSASPTPELGASGSQVPLFHPGNQRPPMARVEG 630
>06_02_0216 +
13157377-13157583,13159271-13159339,13160727-13160851,
13160959-13161190
Length = 210
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 220 QARSPSSLWASRDQYSDSSSGAGVEGVCRERLDPTSSR 107
QARS + WA + +DS G G EG+C + LD + R
Sbjct: 176 QARSRA--WAG-EGVADSRVGVGKEGLCADHLDRSIGR 210
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 207 PAHSGRRATSTPTPARGPALRASAGSASTPRHPGGNRP 94
P+ G +S+PTP P +S S +TP GG P
Sbjct: 140 PSTPGGGCSSSPTPCDAPPSPSSDTSPTTPGGGGGYSP 177
>08_02_1367 +
26432425-26432622,26434071-26434162,26434337-26434403,
26434519-26434638,26434792-26435023,26435525-26435606,
26435985-26436117,26436332-26436537,26436633-26436758,
26437208-26437907
Length = 651
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 538 ASIASWALDADRDAGIVTTTRVTHASPAGAYAHTAD 645
++I W++ DRD G V T H+S Y ++D
Sbjct: 585 SAIPKWSVFRDRDFGFVKLTAFNHSSLLFEYKKSSD 620
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 186 ATSTPTPARGPALRASAGSASTPRHPGGNRPY 91
A P A P++ A A + S+P P G PY
Sbjct: 211 AAKAPPAAPAPSMPAPAPTLSSPERPHGGFPY 242
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 210 PPAHSGRRATSTPTPARGPA-LRASAGSASTPRHPGGNRP 94
PP + GR + P GP + GS S HPGG P
Sbjct: 159 PPEYQGRGGPGSHHPGGGPPDYQGRGGSGS--HHPGGGPP 196
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 12 DSADMVRXXXXXXXXAAGSCGRRYGLDKDGYHRDDVGSRRSLQT 143
D D + A GS R YG D+D Y D+ S R Q+
Sbjct: 235 DREDEYKGSHSNHEYAEGSGRRSYGRDRDSYGDDEAYSSRGRQS 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,101,963
Number of Sequences: 37544
Number of extensions: 391894
Number of successful extensions: 2099
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2095
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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