Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0992
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1741| Best HMM Match : Alk_phosphatase (HMM E-Value=0.033) 79 4e-15
SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.051
SB_11941| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.03) 32 0.47
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13) 29 3.3
SB_16326| Best HMM Match : Sushi (HMM E-Value=5.4e-18) 29 3.3
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 29 4.4
SB_23657| Best HMM Match : Sushi (HMM E-Value=0) 29 4.4
SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_21310| Best HMM Match : Peptidase_C33 (HMM E-Value=3.4) 28 7.7
>SB_1741| Best HMM Match : Alk_phosphatase (HMM E-Value=0.033)
Length = 227
Score = 78.6 bits (185), Expect = 4e-15
Identities = 39/84 (46%), Positives = 51/84 (60%)
Frame = +2
Query: 257 MFLGDGMSVATLTAARTLLGQRRGQTGEESRLSFEHFPTVGLSKTYCLDAQVADSACSAS 436
+F+GDG + T TA R L GQ +GQ GE+ LS+E FP GLSKTY + Q +DSA +A+
Sbjct: 60 IFVGDGCDINTNTAGRILKGQLKGQVGEKGWLSYEEFPYTGLSKTYTTNRQGSDSAGTAN 119
Query: 437 AYLCGAKANLGTIGVSGHVARHHC 508
A G K IGV+ V + C
Sbjct: 120 AMFTGVKTRSAMIGVNEEVVTNKC 143
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 541 SIASWALDADRDAGIVTTTRVTHASPAGAYAHTADRNW 654
SI A +A G +T+ R+THA+PA YAH+A R W
Sbjct: 154 SILKLAEEAGMATGFITSMRLTHATPANLYAHSASRYW 191
>SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 653
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +1
Query: 532 QLASIASWALDADRDAGIVTTTRVTHASPAGAYAHTADRNW 654
++ SI + A +A G VTTTRVTHASPA YAH+ DR+W
Sbjct: 576 KVKSIITLAEEAGMSTGFVTTTRVTHASPAVLYAHSPDRDW 616
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 35.1 bits (77), Expect = 0.051
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Frame = -2
Query: 310 QRAGGRECGHGHAVSEEHET-FRAYP--LLPSYQARSPSSLWASRDQYSDSSSGAGVEGV 140
QR G C G + T A P + P + S W SRD SDSS A ++ +
Sbjct: 4667 QRVGTTPCATGEPTTRRFSTGSNAKPKKVPPPTPPKKRSGSWKSRDSDSDSSIDAVLDEM 4726
Query: 139 CRERLDPTSSRW*PSLSNPYRRPQEPAASSERSVNKRTMSAESN 8
+ R R S N R+ EP+ +S R+V ++S+
Sbjct: 4727 EKRRAGYEDRR--KSFENLKRKFSEPSCTSPRNVMNGQRDSKSD 4768
>SB_11941| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.03)
Length = 382
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +3
Query: 174 EYWS-RDAQS----ELGERAWYDGSSGYARNVSCSSETACPWPHSRP 299
+YW+ +D +S + + WY SG + C CPWP RP
Sbjct: 278 KYWTFKDQESVDMCQSCKSGWYQPLSGETSCIECPEGYFCPWPDRRP 324
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 228 GSSGYARNVSCSSE--TACPWPHSRPPARCSASAGDRLERSPDCLSN 362
G ++VSC+S + C + RP C +S GD P C SN
Sbjct: 260 GDCDVCKDVSCTSPPFSTCVALNGRPACSCPSSCGDESLPQPICGSN 306
>SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)
Length = 1052
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 511 AATDAAHQL--ASIASWALDADRDAGIVTTTRVTHASPAGAYAHTAD 645
A T+ A L A + +W + D + T+T++T SP + HT D
Sbjct: 1003 ALTERARNLYKAVVITWRMKLRDDKSVKTSTQLTMDSPMAQHNHTID 1049
>SB_16326| Best HMM Match : Sushi (HMM E-Value=5.4e-18)
Length = 258
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -1
Query: 476 RWCPN*PLHRTGRRRPSKPSLLPGRLGSRS*KVRQLENVRKTIGTPLQSVPGAGRAAC 303
RW PN PLH + + PSL+ + +VR +R + P + G GRA+C
Sbjct: 51 RWSPNFPLHNICKAQCILPSLISNGVA----RVRDGTTIRYSC-NPGYTRSGPGRASC 103
>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1513
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 132 SLQTPSTP-APELESEYWSRDAQSELG-ERAWYDGSSGYARNVSCSSETA 275
S +TPSTP P + S + G +R+ Y GY+ N S SSE++
Sbjct: 621 SHETPSTPQTPRSPTSSMSGPFDNAFGRKRSPYHSDKGYSSNTSLSSESS 670
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 120 GSRRSLQTPSTPAPELESEYWSRDAQSELGERAWYDGSSGYARN 251
G RS Q+PSTP+ E S D+ G++ Y G GY R+
Sbjct: 419 GEGRSSQSPSTPSVESPK---SNDSPQPAGQQK-YQGRKGYQRH 458
>SB_23657| Best HMM Match : Sushi (HMM E-Value=0)
Length = 331
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -1
Query: 476 RWCPN*PLHRTGRRRPSKPSLLPGRLGSRS*KVRQLENVRKTIGTPLQSVPGAGRAAC 303
RW PN PLH + + PSL+ + ++R +R + P + G GRA+C
Sbjct: 265 RWSPNFPLHNICKAQCILPSLISNGVA----RIRDGTTIRYSC-NPGYTRSGPGRASC 317
>SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 378 PTVGKCSKDNRDSSPVCPRRWPSSVRAAVSVATDM 274
P KC+ D R C RW +SVR ++S A D+
Sbjct: 117 PLYLKCNHD-RSVEKQCVVRWLASVRTSISTAVDV 150
>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2126
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Frame = +3
Query: 69 CGRRYGLDK------DGYHRDDVGSRRSLQTPSTPAPELESEYWSRDAQSELGERAWYDG 230
CG ++ DK + YHR + G S +TP T E+ D Q E A DG
Sbjct: 707 CGIKFDHDKILKLHMENYHRINKGQSNSPETPETSGQGAHQEF---DDQDEQYHDATLDG 763
Query: 231 SSGY 242
+ Y
Sbjct: 764 ETEY 767
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/70 (24%), Positives = 25/70 (35%)
Frame = -3
Query: 210 PPAHSGRRATSTPTPARGPALRASAGSASTPRHPGGNRPYLIHIDGXXXXXXXXRGVSTN 31
P + T T P + +ASTP+ PG +P I+ +
Sbjct: 279 PEVPGPTQPTQTKKTTTKPVSQPGETTASTPKAPGPTQPASTTIEATPQPETQPGASTAK 338
Query: 30 APCRLSPTLS 1
AP PT+S
Sbjct: 339 APGSTEPTVS 348
>SB_21310| Best HMM Match : Peptidase_C33 (HMM E-Value=3.4)
Length = 258
Score = 27.9 bits (59), Expect = 7.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 255 SCSSETACPWPH 290
+C E ACPWPH
Sbjct: 241 NCQDEGACPWPH 252
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,104,679
Number of Sequences: 59808
Number of extensions: 371225
Number of successful extensions: 1840
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1817
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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