Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0992
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05545.1 68416.m00609 transcription factor, putative / zinc f... 29 2.7
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 29 3.6
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve... 29 3.6
At2g14580.1 68415.m01633 pathogenesis-related protein, putative ... 29 3.6
At1g72850.1 68414.m08426 disease resistance protein (TIR-NBS cla... 29 3.6
At3g63500.2 68416.m07153 expressed protein 28 4.8
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 28 6.3
At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containi... 28 6.3
At5g44390.1 68418.m05435 FAD-binding domain-containing protein s... 27 8.3
At3g42690.1 68416.m04439 Ulp1 protease family protein contains P... 27 8.3
At3g10380.1 68416.m01244 exocyst complex component-related ident... 27 8.3
At1g13760.1 68414.m01615 hypothetical protein 27 8.3
>At3g05545.1 68416.m00609 transcription factor, putative / zinc
finger (C3HC4 type RING finger) family protein similar
to VIP2 protein [Avena fatua] gi|6996144|emb|CAB75506;
contains Pfam domain PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 425
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = -3
Query: 204 AHSGRRATSTPTPARGPALRASAGSASTPRHPGGNRPYLIH 82
AH G TP PA RA+ PR P RP+ H
Sbjct: 246 AHVGSPTQPTPPPAAARTSRANGSDMIRPRPPHFTRPFHGH 286
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -2
Query: 304 AGGRECGHGHAVSE-EHETFRAYPLLPSYQARSPSSLWASRDQ--YSDSSSGAGVEGVCR 134
+G H H ++ + F AY L + + SPSS+ ++ Q + SSSGA +C
Sbjct: 34 SGSDSENHQHRHNDLSNSIFEAY--LDCHSSSSPSSIDLAKIQSFLASSSSGAVSCLICL 91
Query: 133 ERLDPTSSRW 104
ER+ T W
Sbjct: 92 ERIKRTDPTW 101
>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
40S ribosomal protein S26
Length = 130
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 210 PPAHSGRRATSTPTPAR-GPALRASAGSASTPR 115
PP RR TP PA+ G A R + G+ + PR
Sbjct: 97 PPPRFARRKEDTPKPAQPGQAPRPAGGAPAAPR 129
>At2g14580.1 68415.m01633 pathogenesis-related protein, putative
similar to SP|P33154 Pathogenesis-related protein 1
precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 161
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 192 AQSELGERAWYDGSSGYARNVSCSSETACPWPHSRPP--ARCSASAGD 329
+Q +G W +G + YARN + + C HSR P + S GD
Sbjct: 42 SQIGVGPMQWDEGLAAYARNYANQLKGDCRLVHSRGPYGENLAKSGGD 89
>At1g72850.1 68414.m08426 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 422
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 96 DGYHRDDVGSRRSLQTPSTPAPELESEYWSRDA 194
+GY D + R T T P L+S YWS +A
Sbjct: 112 EGYPDDKIQEWRVSLTKLTNIPALDSRYWSNEA 144
>At3g63500.2 68416.m07153 expressed protein
Length = 1162
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 63 GSCGRRYGLDKDGYHRDDVGSRRSLQTPSTPAPELESEYWSRDAQSELGERAWYDGSSGY 242
G G +G+D D RSL++PS WSRD+ +EL + D +
Sbjct: 110 GGPGNDFGVDDRDRRLRDAERDRSLKSPS----------WSRDSPNELSKFKPLDSRNSR 159
Query: 243 ARNVSCSSET 272
+R+ S +S T
Sbjct: 160 SRSKSLASPT 169
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 207 PAHSGRRATSTPTPARGPALRASAGSASTPRHPGGNRPYL 88
P+ G S T + +AS+ S S+PRH G P++
Sbjct: 241 PSFRGNNGVSIGTFSPKATFQASSTSWSSPRHVNGTSPFI 280
>At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q99615 DnaJ homolog
subfamily C member 7 (Tetratricopeptide repeat protein
2) {Homo sapiens}; contains Pfam profile PF00515: TPR
Domain
Length = 721
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 207 PAHSGRRATSTPTPARGPALRASAGSASTPRHPGGNR 97
PA + RA+S G +R S+ SAS P GN+
Sbjct: 124 PARAQSRASSQVGAKTGNIIRPSSNSASVTTKPSGNK 160
>At5g44390.1 68418.m05435 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 542
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +2
Query: 284 ATLTAARTLLGQRRGQTGEESRLSFEHFPTVGLSKTYCLDAQVADSACSASAY 442
A T +GQ G+ G + + FP +GL++ C++ DS S +
Sbjct: 307 ANKTVTMAYIGQFLGEKGTLMEVMKKDFPELGLTQKDCIEMSWIDSIIYNSGF 359
>At3g42690.1 68416.m04439 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At2g11345, At4g04130
Length = 1009
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 90 DKDGYHRDDVGSRRSLQTPSTPAPELESEYWSRDAQSELGERAWYDGS 233
+KD D G Q P++P P L +A+ E+ E +GS
Sbjct: 627 EKDAIEDDTFGEENQTQNPASPIPNLPKTK-EGEAEEEMVEETIIEGS 673
>At3g10380.1 68416.m01244 exocyst complex component-related
identical to Probable exocyst complex component Sec8
(Swiss-Prot:Q93YU5) [Arabidopsis thaliana]; weak
similarity to Exocyst complex component Sec8 (rSec8)
(Swiss-Prot:Q62824) [Rattus norvegicus]
Length = 1053
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 496 ATPLSAATDAAHQLASIASWALDAD-RDA---GIVTTTRVTHAS 615
ATP +A+ DAA Q A +A A D RDA G+ T R T A+
Sbjct: 528 ATPEAASADAAAQTAKLAKKAPKKDKRDAPEDGLTFTFRFTDAT 571
>At1g13760.1 68414.m01615 hypothetical protein
Length = 81
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 547 ASWALDADRDAGIVTTTRVTHASPAGAYAHTAD 645
+SW+L D+D G VT V H++ Y ++D
Sbjct: 27 SSWSLLGDKDFGFVTLIVVDHSTIQFEYRRSSD 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,841,664
Number of Sequences: 28952
Number of extensions: 249357
Number of successful extensions: 930
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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