Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0990
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07785.1 68415.m00946 NADH-ubiquinone oxidoreductase, putativ...    46   2e-05
At1g18510.1 68414.m02310 hypothetical protein                          32   0.40 
At3g49450.1 68416.m05405 F-box family protein contains F-box dom...    28   6.6  

>At2g07785.1 68415.m00946 NADH-ubiquinone oxidoreductase, putative
           similar to NADH-ubiquinone oxidoreductase chain 1 (EC
           1.6.5.3) (Swiss-Prot:Q01300) [Petunia hybrida]
          Length = 99

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
 Frame = +3

Query: 3   SNYFCYYFSPVFRFIXXXXXXXXIPYIFNLICF--NLGILFFLCLTSLGVYIVIIAGWSS 176
           +N+F +  +PV  F+        +P+ + ++    N+G+L+   ++SLGVY +IIAG SS
Sbjct: 39  ANFFLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGRSS 98

Query: 177 N 179
           N
Sbjct: 99  N 99


>At1g18510.1 68414.m02310 hypothetical protein
          Length = 238

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 487 IFKYFIYRMILVIINMGGYNLRFFFY 564
           +F  +IY MI V I +GGY+L+ F Y
Sbjct: 60  MFTIYIYAMIFVSIVLGGYSLKCFIY 85


>At3g49450.1 68416.m05405 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 397

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +3

Query: 75  PYIFNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISYEVRI 245
           PY    IC N G+LF+L + S     + ++    + N+  +     ++  I+Y+ R+
Sbjct: 228 PYYHGSICIN-GVLFYLAMKSESKEYMTVSFHMKDENFMFIPNQDLLSTLINYKGRL 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,568,810
Number of Sequences: 28952
Number of extensions: 100430
Number of successful extensions: 245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)