Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0987
(731 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 30 2.2
SB_42753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_56319| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1) 28 6.8
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 28 6.8
SB_5845| Best HMM Match : Ribosomal_S27 (HMM E-Value=8.3) 28 6.8
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 9.0
SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07) 28 9.0
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 29.9 bits (64), Expect = 2.2
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +3
Query: 312 HPEFSEENYDKDVSIVRVTHAIHF 383
HP +S ++YD D++++R+ + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222
>SB_42753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 28.7 bits (61), Expect = 5.1
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Frame = +3
Query: 102 SQPGPN*SIPTHLESMVPTVRWY----CSHQLPLPFNCYLFPWRILRSCIPSHYRGSSRR 269
S PGPN P E + + WY S P N YL+ + +S P H+ G
Sbjct: 110 SMPGPNFPTPVKSERFLNLLSWYKPSLFSSYEPAT-NAYLY--KGFKSGFPLHFEGD--- 163
Query: 270 SEPGEISYVHFAVNHPEFSEENYDKDVSIVRVTHAIHFGP 389
E + + A +HPE + K++ R+ + P
Sbjct: 164 LESIQSQILLSAFDHPEIVDAKLFKELEAHRLAGSFGIPP 203
>SB_56319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +3
Query: 216 WRILRS---CIPSHYRGSSRRSEPGE 284
WRILR+ C HYR + R EPGE
Sbjct: 99 WRILRTKTTCPVRHYRFNRRVQEPGE 124
>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 509 LEVAVRYTAALNGSSPSEQI-NKNTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILVVI 333
+++ V Y AA+ S Q N+N L Y + D + A + M SY+ + +
Sbjct: 303 MKIKVNYVAAVQDESTYSQFYNENNLKYEEEFTDVLENIKTRARIVIMVTSYNMAVEGMH 362
Query: 332 LLREFGMVNSK 300
L + G++N +
Sbjct: 363 LAKNRGLINGE 373
>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
Length = 1282
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 179 PTTTTFQLLPVSMENSTILHTVALSRIFPSQ*AR*N---ILCSLCC*PSRIL*GELRQGC 349
P+ ++P++ + H V +S FPS+ A + I CS C P R+L C
Sbjct: 747 PSRAHVDVIPIACSCRCVPHHVLMSMCFPSR-AHVDVFPITCSCRCVPHRVLMSMCSPSC 805
Query: 350 EH 355
H
Sbjct: 806 AH 807
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 647 HPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 549
+PS+ C + P +++ YQS+ HD C +
Sbjct: 171 NPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203
>SB_5845| Best HMM Match : Ribosomal_S27 (HMM E-Value=8.3)
Length = 265
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +3
Query: 216 WRILRS---CIPSHYRGSSRRSEPGE 284
WRILR+ C HYR + R EPGE
Sbjct: 63 WRILRTKTKCPVRHYRFNRRVQEPGE 88
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 524 VTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLG 646
V N C++ Y+ VT N CAG + RD N D G
Sbjct: 1321 VVNHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSG 1360
>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 473
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 106 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 228
+LV +E + P N+W ++ +LT Y STA G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150
>SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)
Length = 778
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/60 (21%), Positives = 25/60 (41%)
Frame = -2
Query: 616 TSPDQTGAEFVISHDAIMTLVLFPAVFFVGHNEFELWRLPSDTLPP*TVVPHPSRSTKIP 437
+S +QT + + L ++P + W++P+ TLP T + K+P
Sbjct: 213 SSDNQTTLVPTVVKPEFLPLTVYPVIINDNDRAINYWQIPNSTLPRPTWIALSQEEYKVP 272
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,199,129
Number of Sequences: 59808
Number of extensions: 593933
Number of successful extensions: 1513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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