Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0987
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.84 
AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   1.1  
Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   3.4  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   3.4  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC024751-9|AAK21508.2|  677|Caenorhabditis elegans Pif1p dna hel...    28   5.9  
AB015041-1|BAA28677.1|  677|Caenorhabditis elegans PIF1 protein.       28   5.9  
U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical
           protein T08G3.2 protein.
          Length = 343

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +1

Query: 106 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIADLPVAVSPVK 285
           S V + ++LP+LN  F    GI L  +        F   +    YRR + D+   ++P K
Sbjct: 266 SPVFLVIYLPLLNLDFSLPMGIFLGIFSLYPALDAFILMYVVTDYRRALKDVLKVLNPFK 325

Query: 286 YLMFTLLLTIPNSLRRI 336
            +  + L+ IP   + I
Sbjct: 326 KVTVSTLVVIPGQAQFI 342


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 347 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 448
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 371 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 502
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical
           protein F36H9.1 protein.
          Length = 471

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
 Frame = -1

Query: 662 WKKAGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTVPC-SFLCWSQ*VRALEVAVRYT 486
           W +    +++C    +   P    ICY S+RD    T  C    C+        V  +  
Sbjct: 375 WLQCICDTEFCNREQNIEVPLGNVICYLSKRDQSERTKYCIGQKCYLFYEDINNVKEKGC 434

Query: 485 AALNGSSPSEQINKNTLGYY---DTLLDNSTLL 396
           +++N  +P E+     LGYY   D  L N  LL
Sbjct: 435 SSVNDEAPEEEKRLGKLGYYTYCDENLCNGDLL 467


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 347  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 442
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical
           protein T27F6.2 protein.
          Length = 421

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/86 (25%), Positives = 32/86 (37%)
 Frame = +2

Query: 395 PAGCYYPTRCRNTPGYFC*SARMGNYRSRRQCI*RQPPKLELIVTNKENCREQYKGHDRV 574
           PAG ++ T C N PGY+    + G      QC    P  +     N  NC       D +
Sbjct: 266 PAGFWFSTNC-NNPGYYICKRQAG-----VQCSAAPPATVTPSPANPSNCNAGRLMSDGI 319

Query: 575 VTDNKFCAGLVRAGGRDYDNTDLGAL 652
           +T   F           Y  + LG++
Sbjct: 320 ITSPNFPQNYFNNANCAYQISTLGSM 345


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 125 YSYPS*INGSNSALVLFSPTTTTFQLL 205
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -1

Query: 650 GHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 549
           GH       RGH P P R R  Y +   HDPC V
Sbjct: 222 GHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -1

Query: 650 GHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 549
           GH       RGH P P R R  Y +   HDPC V
Sbjct: 341 GHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
            T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -3

Query: 216  METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 37
            +E  SS  V    E+     +EP++++  +Y +LD   M + RHRS +I S    D   H
Sbjct: 907  LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963

Query: 36   SY 31
             Y
Sbjct: 964  DY 965


>AC024751-9|AAK21508.2|  677|Caenorhabditis elegans Pif1p dna
           helicase (yeast) homologprotein 1 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -1

Query: 314 MVNSKVNIRYFTGLTATGRSAIMRR 240
           ++NS+ ++ +FTG   TG+S I+RR
Sbjct: 257 VINSRTSV-FFTGSAGTGKSVILRR 280


>AB015041-1|BAA28677.1|  677|Caenorhabditis elegans PIF1 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -1

Query: 314 MVNSKVNIRYFTGLTATGRSAIMRR 240
           ++NS+ ++ +FTG   TG+S I+RR
Sbjct: 257 VINSRTSV-FFTGSAGTGKSVILRR 280


>U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical
           protein F41H10.6a protein.
          Length = 863

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 144 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYRGSSRRSEPGEI 287
           S+V  +R  W C    P   +  L  W I+ + +  +Y  ++RR++ GEI
Sbjct: 355 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 404


>U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical
           protein F41H10.6c protein.
          Length = 957

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 144 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYRGSSRRSEPGEI 287
           S+V  +R  W C    P   +  L  W I+ + +  +Y  ++RR++ GEI
Sbjct: 357 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 406


>U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical
           protein F41H10.6b protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 144 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYRGSSRRSEPGEI 287
           S+V  +R  W C    P   +  L  W I+ + +  +Y  ++RR++ GEI
Sbjct: 355 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,169,171
Number of Sequences: 27780
Number of extensions: 420874
Number of successful extensions: 1140
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)