Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0986
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49800| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_23393| Best HMM Match : YagB_YeeU_YfjZ (HMM E-Value=7.2)            28   7.5  

>SB_49800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 492 ILFYYLQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFPLIC 635
           ++FYY   Y  ++    + DRI     ++ T   GI+VI+G  F + C
Sbjct: 66  LVFYYTDFYIAVK----VDDRINRPWLYLGTALIGINVIVGLYFVVWC 109


>SB_23393| Best HMM Match : YagB_YeeU_YfjZ (HMM E-Value=7.2)
          Length = 131

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +1

Query: 388 ILIRSGVTVT*AHHSL--IENNFSQTKQRLFLTILLGFYFTIY 510
           +L+++G ++  A  +L  +E+ +SQT++ +   +L   YF +Y
Sbjct: 34  LLVQNGKSIRYASRALSDVESRYSQTEREMLGVVLAAEYFRLY 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,638,797
Number of Sequences: 59808
Number of extensions: 196811
Number of successful extensions: 306
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)