Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0982
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    83   4e-17
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    80   4e-16
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    60   2e-10
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    27   3.8  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    25   8.7  

>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
 Frame = +2

Query: 17  WVLMGPGV-GLAYILAEAGYDVWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDL 193
           WV +      L ++L E+GYDVWLGN RG  YSR HI   P  D EFW FS +++   D+
Sbjct: 130 WVAVNESERSLPFVLIESGYDVWLGNNRGNKYSRKHITYKP-KDEEFWNFSLDDMAMFDI 188

Query: 194 PAMIDYTLKVAGKRRLHYIG 253
           P  +DY L+  G+ +L+YIG
Sbjct: 189 PDTVDYILRETGREKLNYIG 208


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
 Frame = +2

Query: 17  WVL-MGPGVGLAYILAEAGYDVWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDL 193
           WV  + P   L + L   GYDVWLGN RG  YSR H++ D   D EFW FS ++    D+
Sbjct: 142 WVCNVDPRNCLVFDLVNKGYDVWLGNNRGNKYSRQHLRFD-STDKEFWDFSIDDFAQYDI 200

Query: 194 PAMIDYTLKVAGKRRLHYIG 253
           P  IDY LK +G+ +L YIG
Sbjct: 201 PDTIDYILKTSGQTKLTYIG 220


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 28/70 (40%), Positives = 39/70 (55%)
 Frame = +2

Query: 44  LAYILAEAGYDVWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKV 223
           + + L E GYDVWLGN RG  YS  +IK    N  +FW FS + I   D+P+++ Y L V
Sbjct: 144 IPFALVEQGYDVWLGNLRGNKYSIKNIKFSSQN-PKFWDFSLDSIAIFDIPSIVKYILSV 202

Query: 224 AGKRRLHYIG 253
                +  +G
Sbjct: 203 NSFDSISLVG 212


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 331 AYAPVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFTNLGMR 483
           +Y P   +  N N+       ++N  EA  S  GI+ +FG++DF   LG++
Sbjct: 37  SYKPAPRIRINNNKTKAQTTTNSN--EARQS--GISAMFGQNDFSNLLGLK 83


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +2

Query: 32  PGVGLAYILAEAGYDVWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIDY 211
           P   L +++  AG+ VWLG +         I L+P    E   F+       DL +  D 
Sbjct: 72  PLKNLTHLIIVAGHAVWLGGSTNGEDDSEWI-LEPYQKGEGKVFAQHVRSGLDLLSQDDS 130

Query: 212 TLKV-AGKRRLHYIGPHKELLSF 277
           +L V +G +  +  GP  E  S+
Sbjct: 131 SLLVFSGGQTRNGAGPSSEAQSY 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,365
Number of Sequences: 5004
Number of extensions: 65741
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)