Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0982
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 84 1e-16
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 54 2e-07
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 49 5e-06
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 46 3e-05
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 39 0.005
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591 30 1.7
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 30 2.2
06_02_0329 - 14483954-14483984,14490155-14490843 29 5.2
12_02_0670 - 21700523-21700932,21701266-21701390,21701476-217016... 28 9.1
06_01_0198 + 1529190-1530371 28 9.1
02_04_0561 + 23879976-23879981,23880531-23882558,23882687-238827... 28 9.1
02_02_0146 - 7171656-7172044,7172383-7175008 28 9.1
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 84.2 bits (199), Expect = 1e-16
Identities = 35/79 (44%), Positives = 52/79 (65%)
Frame = +2
Query: 17 WVLMGPGVGLAYILAEAGYDVWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLP 196
W+L P L YILA+ G+DVW+ N RGT +S H+ LDP + S +W +SW++I D+P
Sbjct: 111 WLLGSPEESLPYILADQGFDVWIANNRGTRWSSRHVSLDPKSRS-YWNWSWDDIVVNDMP 169
Query: 197 AMIDYTLKVAGKRRLHYIG 253
A++DY G++ HY+G
Sbjct: 170 AIVDYVCSHTGQKP-HYVG 187
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 53.6 bits (123), Expect = 2e-07
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +2
Query: 17 WVLMGPGVGLAYILAEAGYDVWLGNARGTYYSRAHIKL 130
W++ P L YILA+ GYDVW+ N+RGT YSR H L
Sbjct: 116 WLMNSPNESLGYILADNGYDVWIANSRGTVYSRHHTSL 153
Score = 45.6 bits (103), Expect = 4e-05
Identities = 13/34 (38%), Positives = 26/34 (76%)
Frame = +2
Query: 152 FWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIG 253
+W +SW+E+ ++DL A++ Y AG++++HY+G
Sbjct: 200 YWNWSWDELSSKDLSAVVQYVYSQAGQQKMHYVG 233
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Frame = +2
Query: 65 AGYDVWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKV----AGK 232
AGYDV+LGN RG SR H+ + + ++WK+S E GT+D+PA+++ K+ GK
Sbjct: 125 AGYDVFLGNLRGLV-SREHVDKNISS-YKYWKYSVNEHGTKDMPAIVEEIHKIKTSELGK 182
Query: 233 RRLH 244
R H
Sbjct: 183 SRPH 186
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 17 WVLMGPGVGLAYILAEAGYDVWLGNARGTYYSRAH--IKLDPDNDSEFWKFSWEEIGTR 187
W + L YILA+ G+DVW+GN RGT +S+ H + ++ W W +G R
Sbjct: 104 WFINSAEQSLGYILADNGFDVWIGNVRGTRWSKGHSTFSVHDKVNTLHWN-EWRALGLR 161
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 152 FWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGPHKELLSFGL 283
FW +SW+E+ DL AM+ Y V + ++ Y+G H + GL
Sbjct: 209 FWDWSWQELAEYDLLAMLGYVYTVT-QSKILYVG-HSQGTIMGL 250
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 661 FRRYDHGRLTNWRVYRSFTPPRYDLSLI 744
F +YD+G L N R Y PP +DLS I
Sbjct: 355 FAKYDYGLLGNLRRYGHLRPPAFDLSSI 382
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 38.7 bits (86), Expect = 0.005
Identities = 13/34 (38%), Positives = 25/34 (73%)
Frame = +2
Query: 152 FWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIG 253
+W++SW+E+ + DLPA++ + G+ ++HYIG
Sbjct: 129 YWEWSWDELASYDLPAVLQFAYDHTGE-KIHYIG 161
>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
Length = 455
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 56 LAEAGYDVWLGNARGTYYSRA-HIKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKVAGK 232
L +AG+ V+ + GTY+ H DND EF ++ E+G +P + Y GK
Sbjct: 370 LKDAGFIVYPSS--GTYFVMVDHTPFGFDNDIEFCEYLIREVGVVAIPPSVFYLNPEDGK 427
Query: 233 RRLHY 247
+ +
Sbjct: 428 NLVRF 432
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +2
Query: 47 AYILAEAGYDVWLGNARGTYYSRAHIKLDPDND-SEFWKFSWEEIGTRDLPAMIDYTLK 220
A +L E G +W GNA Y + + D + F W G DYT K
Sbjct: 315 AKVLQEKGIHIWDGNASREYLDSVGLAHREEGDLGPVYGFQWRHFGAEYTDMHADYTGK 373
>06_02_0329 - 14483954-14483984,14490155-14490843
Length = 239
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 80 WLGNARGT-YYSRAHIKL-DPDNDSEFWKFSWEEIGTRDLP 196
+LG A T + R HI++ D DN +W +W+ D P
Sbjct: 197 YLGRAVATGIFERIHIRIYDDDNCEAYWHLAWDNNYFDDFP 237
>12_02_0670 -
21700523-21700932,21701266-21701390,21701476-21701651,
21702937-21703128
Length = 300
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/58 (22%), Positives = 29/58 (50%)
Frame = +2
Query: 89 NARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGPHK 262
NA SR ++ P +++ +G+++L ++++ V G+ + Y+GP K
Sbjct: 119 NAMPAVLSRYGVRSFPSILIACGPYAYWPVGSKELDSLVNVYTAVTGQEPIAYLGPRK 176
>06_01_0198 + 1529190-1530371
Length = 393
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 23 LMGPGVGLAYILAEAGYDVWLGNARGTYYSRAHIKLDPDND 145
L+ GL + + A ++L A +Y R H+ PD +
Sbjct: 261 LLAAAAGLQLLASRAAVQMYLNEAVFCWYQRLHVSRSPDTE 301
>02_04_0561 +
23879976-23879981,23880531-23882558,23882687-23882722,
23882826-23882939,23883158-23883226,23883311-23883445
Length = 795
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 470 LVKKSDLPNSSFIPIRLVSASILLACGAMS 381
+V K D+P ++FI + S+LL CG +S
Sbjct: 242 VVGKYDMPLATFIGVNHHGQSVLLGCGLLS 271
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 325 MQAYAPVAYLEFNANRLLKLIAPHANSIEALTSL-IGINELFG 450
M +A + L+ NRL LI P S+ LTSL + N++ G
Sbjct: 494 MSRFANLTELDLAGNRLSGLIPPSMQSLTKLTSLNLSSNQISG 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,368,652
Number of Sequences: 37544
Number of extensions: 415323
Number of successful extensions: 1015
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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