Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0981
         (545 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.57 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.7  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   7.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   7.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 205 AATASSQAVNVRYTAPAVDASGPSEPGK*GC 297
           AATA++ A   +Y+A    A GPS+P    C
Sbjct: 111 AATAAATATEYKYSAA---APGPSDPSVSSC 138


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 184 RSFVVTRAATASSQAVNVRYTAPAVDASGPSEP 282
           RSF+V    + + + +N RY  P++  + P  P
Sbjct: 5   RSFLVDSLISNTPKDMNARYLPPSLSDTRPMLP 37


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 391 SMYRFGDAKPHLSTRKTH 444
           SM  F  A PHLS   TH
Sbjct: 66  SMAEFMTALPHLSGDMTH 83


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 391 SMYRFGDAKPHLSTRKTH 444
           SM  F  A PHLS   TH
Sbjct: 66  SMAEFMTALPHLSGDMTH 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,452
Number of Sequences: 336
Number of extensions: 1755
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)