Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0981
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    26   3.2  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   5.5  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    25   7.3  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   9.6  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 251 GAVYLTLTACELAVAARVTTKLRNS 177
           G + +  TACE  +AARV  KL+ S
Sbjct: 328 GVMDVRTTACEALLAARVEQKLKGS 352


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 338 TDPAPDKADSRELGHPYFPGSDGPDASTAGA 246
           T+PAP    +  +  P FP S   + STA A
Sbjct: 370 TNPAPSTFPNPSVASPAFPNSSTSNPSTAPA 400


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 302 LGHPYFPGSDGPD 264
           LGHP FPG  G D
Sbjct: 228 LGHPLFPGESGID 240


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 237 HVDSLRAGCRSTSHNEAP*QSIIWS 163
           +V+S   G  STS+N+ P QS+  S
Sbjct: 336 NVNSYNGGIPSTSYNDTPQQSVTGS 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,309
Number of Sequences: 5004
Number of extensions: 29482
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)