Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0981
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0174 + 1394229-1394346,1394695-1394891,1394972-1395052,139... 28 4.2
10_01_0133 + 1621574-1625779 28 5.6
01_01_0088 + 688792-691441,691629-693013 28 5.6
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 27 7.4
12_01_0175 + 1304138-1304255,1304597-1304793,1304873-1304953,130... 27 9.8
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 27 9.8
09_03_0057 + 11944973-11947159 27 9.8
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 27 9.8
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351 27 9.8
05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003 27 9.8
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 27 9.8
>11_01_0174 +
1394229-1394346,1394695-1394891,1394972-1395052,
1395184-1395393,1395531-1395608,1395682-1395990
Length = 330
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 112 ADPSSTSRANGLAIGSIAPNDRLLRSFVVTRAATASSQAVNVRYTAPAVDASGPSE 279
A+ S +R G+ + N+R S +TR A SS+A V A+GPS+
Sbjct: 265 ANQHSRTRRRGVKSELVEENERAGPSARMTRRALRSSKAEAVEAAQEVPSAAGPSQ 320
>10_01_0133 + 1621574-1625779
Length = 1401
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 306 ATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 407
A + +VG GG+G T T + R HF+V+IW
Sbjct: 221 AVLPVVGPGGIGKTTFTQHLFHDQRVKKHFHVRIW 255
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 318 LVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 407
+VG GGVG T N R HF V IW
Sbjct: 257 IVGPGGVGKTTFAQHLYNDHRTKQHFTVMIW 287
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -3
Query: 228 SLRAGCRSTSHNEAP*QSIIWSNTAYCQTVCSASRAGVSH---FIS*HGDDCGQHEQKSE 58
S + +TS+NE P +SII Q +C+ A H +S G + G +
Sbjct: 693 SAKNSTENTSYNEEPEESIIKRKIKLHQEMCNDKDAQTKHKVEGVSEIGPEFGPSNDVCK 752
Query: 57 LHLVAKK*TEIQP 19
VAKK ++ P
Sbjct: 753 TETVAKKRSKKTP 765
>12_01_0175 +
1304138-1304255,1304597-1304793,1304873-1304953,
1305080-1305289,1305426-1305503,1305576-1305878
Length = 328
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 112 ADPSSTSRANGLAIGSIAPNDRLLRSFVVTRAATASSQAVNVRYTAPAVDASGPSE 279
A+ S +R G+ + N+R S +TR + SS+A V A+GPS+
Sbjct: 263 ANQHSRTRRRGVKSELVEENERAGPSARMTRRSLRSSKAEAVEAAQEVPSAAGPSQ 318
>11_02_0051 +
7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 303 FATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 407
+ T +VG GG G T + N R HF+V++W
Sbjct: 204 YCTSAIVGHGGAGKTTLAQYIYNDERVVNHFDVRMW 239
>09_03_0057 + 11944973-11947159
Length = 728
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 327 GGVGSTFVTLQFRNSARRGYHFNVQIW 407
GGVG T + Q N R +F+V+IW
Sbjct: 264 GGVGKTTLARQVYNDERVKGYFDVRIW 290
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 327 GGVGSTFVTLQFRNSARRGYHFNVQIW 407
GG+G T + N AR HF++Q W
Sbjct: 671 GGMGKTTLARLVYNDARVQNHFDIQAW 697
>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
Length = 1007
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 318 LVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 407
+VG GGVG T +T N R HF +++W
Sbjct: 200 IVGMGGVGKTTLTQLVYNDVRVKKHFQLRMW 230
>05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003
Length = 385
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 400 RFGDAKPHLSTRKTHMHLFVTQR 468
+ +A PH S R TH+H F+ R
Sbjct: 15 KHANAIPHASARPTHLHTFLIPR 37
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 297 SQFATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 407
S V LVG GGVG T + N+ R HF++++W
Sbjct: 433 SDLDVVPLVGVGGVGKTTLARFVYNNNRIENHFDLRMW 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,090,538
Number of Sequences: 37544
Number of extensions: 206102
Number of successful extensions: 565
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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