Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0981
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35070.1 68417.m04978 expressed protein                             27   6.2  
At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    27   8.2  

>At4g35070.1 68417.m04978 expressed protein 
          Length = 265

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +2

Query: 320 CRGRGRFNFRHSPVQKLSTKRISLQCTDLGTLNLICPPVKHICICL 457
           C G G  N    P +K+        C   G   ++  P +H+C C+
Sbjct: 197 CGGEGDGN--SLPAKKMKMSSCCCNCGSNGVTRVLFLPCRHLCCCM 240


>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 296 VPVRDCPPCRGRGRFNFRHSPV 361
           V V D P   GRGR+N R SPV
Sbjct: 262 VDVYDLPGPAGRGRYNRRMSPV 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,529,799
Number of Sequences: 28952
Number of extensions: 157464
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)