Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0980
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    49   6e-07
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    44   3e-05
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    27   3.4  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   4.5  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   4.5  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.8  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   7.8  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 27/80 (33%), Positives = 41/80 (51%)
 Frame = +3

Query: 3   DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 182
           D+  EEE+ +  + A   E +E    ++ +     + KGIP+FW    +NV  LSEM+  
Sbjct: 126 DEPTEEEIKKG-EAADENEKKEPTSSESKKQEGGDDTKGIPEFWLTAMKNVLSLSEMITP 184

Query: 183 HDEPILKCLQDIKVQMHEDP 242
            DE  L  L DI++   E P
Sbjct: 185 EDEGALSHLVDIRISYMEKP 204



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +1

Query: 508 HFFNPPTLP-EDPNSTVASDVQALLTADFEIGHYIRERVVSRAVLLYTGEGL 660
           +FFNPPT P E+   + + ++  LL  D++IG   +E+++ RAV  +TGE L
Sbjct: 288 NFFNPPTPPSEEDEESESPELDELLELDYQIGEDFKEKLIPRAVEWFTGEAL 339



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +2

Query: 254 LEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS-CKGCEINWNAGXXXXXXX 430
           LEF FA N +FTN +LTK Y      +E  P       +Y   +G +++W          
Sbjct: 208 LEFEFAENPFFTNKILTKTYYYM---EESGP---SNVFLYDHAEGDKVDWKENADLTVRT 261

Query: 431 XXXXXXXXSRGSVRTVTKSVQADSFF 508
                   +    R V  SV  DSFF
Sbjct: 262 VTKKQRNKNTKQTRVVKVSVPRDSFF 287


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +3

Query: 105 PNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 221
           P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIR 199



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 242 HKLHLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS-CKGCEINW 400
           H   LEF F  N+YFTN +LTK Y  K   D+ SP    G  +Y   +G +INW
Sbjct: 208 HGYKLEFEFDSNDYFTNKILTKTYYYK---DDLSP---SGEFLYDHAEGDKINW 255



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +1

Query: 490 PS*LLLHFFNPPTLPEDPNSTVASDVQALLTADFEIGHYIRERVVSRAVLLYTGEG 657
           P+    +FF+PP L +D +     D   LL  D+++G   +++++  A+  +  EG
Sbjct: 287 PNDSFFNFFSPPQLDDDESDDGLDDKTELLELDYQLGEVFKDQIIPLAIDCFLEEG 342


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +2

Query: 227 NA*RPHKLHLEFYFAPNEYF--TNTVLTKEYLMKCKPDEESPLEFEGPE----IYSCKGC 388
           N   P  + +   F PNEY    N  L KE  +K    EE   + EG E     Y+ +  
Sbjct: 85  NEKEPRDVRISLTFQPNEYLQDDNLTLVKEVRIK----EEKAKDDEGLEKKITKYTSQPV 140

Query: 389 EINWNAG 409
           +I+W  G
Sbjct: 141 DIHWKPG 147


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 505 LHFFNPPTLPEDPNSTVASDVQALLTADFEIGHYIR 612
           LHF+ PP+ P+  +ST+  D QA L  D+ +   ++
Sbjct: 272 LHFWQPPSFPD--SSTI--DDQAKLLFDYVVSQVVK 303


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 39  QNAAITEGEEKKDDKAIEPPMDPNVKGIP 125
           +N+ + E EEK D +AIE   + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 597  DLKVRSQQRLYIRGDCRVRIFRQSWWVKEMKKESAWT 487
            D+  R+ +++Y     ++R +RQS W + +  +  WT
Sbjct: 1280 DVFARNSEQVYNGPYDKIRDYRQSKWREWLNSDEGWT 1316


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 15  EEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 122
           EEEL+ ++ N    + E++KD+   +P   P++  +
Sbjct: 475 EEELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSV 510


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 86  YRASNGSQCKGYPRLLVQHIQEC 154
           YR SNG   + Y  L V+ IQ C
Sbjct: 489 YRLSNGKSIQYYSTLFVRLIQSC 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,909
Number of Sequences: 5004
Number of extensions: 51367
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)