Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0980
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 54 8e-08
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 50 2e-06
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 50 2e-06
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 46 2e-05
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 42 6e-04
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 38 0.008
12_02_0025 + 12408933-12409464,12409590-12409686,12410121-124101... 29 4.7
10_08_0081 + 14710478-14710822 28 8.1
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/63 (42%), Positives = 36/63 (57%)
Frame = +3
Query: 63 EEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDP 242
+E + A E D + KG+PDFW + +LSE +QE DEP LK L+DIK +DP
Sbjct: 116 DEPASENAAEGK-DADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDP 174
Query: 243 ISF 251
F
Sbjct: 175 KGF 177
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +1
Query: 508 HFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRAVLLYTGEGL 660
+FF+PP +P ED + A ++Q + D++IG IR++++ AV +TGE +
Sbjct: 254 NFFSPPQVPDDDEDIDEDTADELQGQMEHDYDIGTTIRDKIIPHAVSWFTGEAV 307
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/90 (30%), Positives = 40/90 (44%)
Frame = +2
Query: 239 PHKLHLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGXXX 418
P L+F+F N +F N+VLTK Y M DE+ P+ + G EI W G
Sbjct: 174 PKGFKLDFFFDTNPFFKNSVLTKTYHM---VDEDEPI------LEKAIGTEIEWYPGKNL 224
Query: 419 XXXXXXXXXXXXSRGSVRTVTKSVQADSFF 508
S+ + + +TK+ +SFF
Sbjct: 225 TQKILKKKPKKGSK-NAKPITKTEVCESFF 253
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +3
Query: 96 PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 251
P+ KG+PDFW N +N +L+E + E DE LK L+DIK +DP F
Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGF 253
Score = 38.7 bits (86), Expect = 0.004
Identities = 28/90 (31%), Positives = 38/90 (42%)
Frame = +2
Query: 239 PHKLHLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGXXX 418
P EF+F N +F N VLTK Y M + DE P + G EI W+ G
Sbjct: 250 PKGFKFEFFFYTNPFFKNQVLTKTYHMIDEDDE--------PILEKAIGTEIEWHPG--- 298
Query: 419 XXXXXXXXXXXXSRGSVRTVTKSVQADSFF 508
S S + +TK+ + +SFF
Sbjct: 299 -YCLTQEVLTKESSESTKPITKTEECESFF 327
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +1
Query: 508 HFFNPPTLPEDP---NSTVASDVQALLTADFEIGHYIRERVVSRAVLLYTGEGL 660
+FF+PP +P+D + A ++Q + D++I +R++++ AV +T E +
Sbjct: 328 NFFSPPQVPDDDAKIDENTAEELQNQMERDYDIASTLRDKIIPHAVSWFTREAV 381
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = +3
Query: 93 PPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 251
P KG+P+FW N +N +LSE +QE DE LK L+DIK +P F
Sbjct: 122 PAEQKEEKGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGF 174
Score = 41.5 bits (93), Expect = 6e-04
Identities = 29/90 (32%), Positives = 40/90 (44%)
Frame = +2
Query: 239 PHKLHLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGXXX 418
P LEFYF N +F N+VLTK Y M DE+ P+ + G EI W G
Sbjct: 171 PKGFKLEFYFDTNPFFKNSVLTKTYHM---IDEDEPI------LEKAIGTEIEWFPGKCL 221
Query: 419 XXXXXXXXXXXXSRGSVRTVTKSVQADSFF 508
S+ + + +TK+ +SFF
Sbjct: 222 TQKVLKKKPKKGSK-NTKPITKTENCESFF 250
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +1
Query: 508 HFFNPPTLPEDP---NSTVASDVQALLTADFEIGHYIRERVVSRAVLLYTGE 654
+FF+PP +P+D + A +Q + D++IG IR++++ AV +TGE
Sbjct: 251 NFFSPPQVPDDDEEIDEDTAEQLQNQMEQDYDIGSTIRDKIIPHAVSWFTGE 302
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +3
Query: 114 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 251
KG+PDFW +N +L+E + E DE LK L+DIK +DP F
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGF 148
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +1
Query: 508 HFFNPPTLPEDP---NSTVASDVQALLTADFEIGHYIRERVVSRAVLLYTGEGL 660
+FF+PP +PED + A ++Q + D++I +R++++ V +TGE +
Sbjct: 223 NFFSPPQVPEDDAKIDENTAEELQNQMERDYDIASTLRDKIIPHVVSWFTGEAV 276
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/90 (31%), Positives = 38/90 (42%)
Frame = +2
Query: 239 PHKLHLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGXXX 418
P EF+F N +F N VLTK Y M + DE P + G EI W+ G
Sbjct: 145 PKGFKFEFFFDTNPFFKNQVLTKTYHMIDEDDE--------PILEKAIGTEIEWHPG--- 193
Query: 419 XXXXXXXXXXXXSRGSVRTVTKSVQADSFF 508
S S + +TK+ + +SFF
Sbjct: 194 -NCLTQEVLTKESSESTKPITKTEEYESFF 222
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +3
Query: 111 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 239
+K IPDFW F + ML E++ E D+ I K L+ I V ED
Sbjct: 72 IKQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSED 114
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3
Query: 111 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 239
++ IPDFW F + +LSE++ E D+ + K L+ + V +D
Sbjct: 77 IQTIPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSKD 119
>12_02_0025 +
12408933-12409464,12409590-12409686,12410121-12410127,
12412339-12412465,12412907-12413136
Length = 330
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 209 ARY*SANA*RPHKLHLEFYFAPNEYFTNTVLTKEYLMKCKPDE--ESPLEFEGPEIYSCK 382
A Y +A+ P LH F F PN+ N +E + K +E E+P +E
Sbjct: 189 ATYYTADFKEPPNLHTTFVFVPNKGVQNIQQKEENDVTEKKEEKHEAPAIYEDSFQGKLN 248
Query: 383 GCEIN 397
G EIN
Sbjct: 249 GAEIN 253
>10_08_0081 + 14710478-14710822
Length = 114
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -3
Query: 555 DCRVRIFRQSWWVKEMKKESAWTDLVTVRTDPRDLCFCFF 436
+ R ++ SWW +AW RT PR L C F
Sbjct: 33 EVRRKVRPHSWWSSNAPTTNAWGAFTAPRTVPRWLQGCCF 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,580,892
Number of Sequences: 37544
Number of extensions: 325255
Number of successful extensions: 920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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