Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0980
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    30   2.1  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               29   2.7  
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)                      29   4.8  
SB_31250| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 30/44 (68%), Positives = 34/44 (77%)
 Frame = +2

Query: 254 LEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKG 385
           LEF+F PN +FTNTVLTK Y MKC+PDE+ P  FEGPEI S  G
Sbjct: 297 LEFHFTPNPFFTNTVLTKSYKMKCEPDEDDPFSFEGPEIVSTSG 340



 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
 Frame = +3

Query: 3   DDTEEEELARAVQNAAIT-EGEEK---KDDKAIEPPMDP-NVKGIPDFWYNIFRNVSMLS 167
           D+ EE+E   A + + ++ E EEK    D++ IE    P + KGIP+FW    +NV +LS
Sbjct: 196 DEAEEKEEKEATEVSKLSGEVEEKVKIDDEEKIETEQLPEDTKGIPEFWLTAMKNVELLS 255

Query: 168 EMMQEHDEPILKCLQDIKV 224
           EM+QEHDEPILK L D++V
Sbjct: 256 EMIQEHDEPILKHLHDVRV 274


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 491  GRT**QCELTHGTCASVSSLWS*QLRFYQHSSLFHIPCKN 372
            G T  QCELT G CA  S+  + +L     SSL    CKN
Sbjct: 2616 GSTGKQCELTEGACAK-SNCTADELCVLSESSLTGYECKN 2654


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 81  KAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDE 191
           + I+PP+ P  K +PD   ++ R  + LS  + EH+E
Sbjct: 156 RKIKPPVPPKPKVMPDRAASLSRQSASLSRRIPEHNE 192


>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
          Length = 1119

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +3

Query: 51  ITEGEEKKDDKA-IEPPMDPNV--KGIPDFWYNIFRN 152
           +TE +E+K+DKA IE    P +    +  ++YN FRN
Sbjct: 371 VTENKEEKEDKAKIEDSQTPEIFSHSLDLYFYNEFRN 407


>SB_31250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 96  PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTW 257
           P DP+ K I   W N+F    M + +++     + +CL +  +  H+  +  F W
Sbjct: 110 PSDPSAKMILQPWRNVFSKGFMDAFVLRSIFPKLSQCLAEFVINPHQQHLEPFHW 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,123,568
Number of Sequences: 59808
Number of extensions: 390130
Number of successful extensions: 1006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)